Variant report

Variant	rs9685780
Chromosome Location	chr4:76459927-76459928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1389442	1.00[EUR][1000 genomes]
rs34942800	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56326163	1.00[EUR][1000 genomes]
rs57838127	1.00[EUR][1000 genomes]
rs59253564	1.00[EUR][1000 genomes]
rs6813568	1.00[EUR][1000 genomes]
rs6818993	1.00[EUR][1000 genomes]
rs6840584	1.00[EUR][1000 genomes]
rs6840714	1.00[EUR][1000 genomes]
rs719524	1.00[EUR][1000 genomes]
rs73827625	1.00[EUR][1000 genomes]
rs73827626	1.00[EUR][1000 genomes]
rs73827628	1.00[EUR][1000 genomes]
rs73827639	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827640	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827642	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827644	1.00[EUR][1000 genomes]
rs7674907	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7698555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76440400-76466400	Weak transcription	Small Intestine	intestine
2	chr4:76440400-76473200	Weak transcription	Gastric	stomach
3	chr4:76443400-76470200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:76444400-76461000	Weak transcription	A549	lung
5	chr4:76444400-76471800	Weak transcription	Fetal Brain Male	brain
6	chr4:76451600-76474400	Weak transcription	Psoas Muscle	Psoas
7	chr4:76452600-76468000	Weak transcription	NHLF	lung
8	chr4:76452600-76477400	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:76453200-76473600	Weak transcription	Brain Angular Gyrus	brain
10	chr4:76455000-76469400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:76455000-76470200	Weak transcription	Brain Substantia Nigra	brain
12	chr4:76455000-76470800	Weak transcription	NHDF-Ad	bronchial
13	chr4:76456000-76473000	Weak transcription	HepG2	liver
14	chr4:76456200-76460400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr4:76456400-76471600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:76456600-76461600	Weak transcription	NH-A	brain
17	chr4:76456600-76467400	Weak transcription	HMEC	breast
18	chr4:76456600-76467400	Weak transcription	Osteobl	bone
19	chr4:76456600-76471000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr4:76456600-76473200	Weak transcription	Fetal Heart	heart
21	chr4:76456800-76464200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:76456800-76467600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:76456800-76467800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:76456800-76470000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:76456800-76472400	Weak transcription	Brain Anterior Caudate	brain
26	chr4:76456800-76474400	Weak transcription	HSMMtube	muscle
27	chr4:76457000-76468400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr4:76457000-76470200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr4:76457000-76470800	Weak transcription	HSMM	muscle
30	chr4:76457000-76471800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:76457000-76474400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr4:76458000-76464600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:76458000-76470200	Weak transcription	Right Ventricle	heart
34	chr4:76458200-76464400	Weak transcription	Ovary	ovary
35	chr4:76458200-76465000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr4:76458200-76467400	Weak transcription	Primary B cells from cord blood	blood
37	chr4:76458200-76468000	Weak transcription	Left Ventricle	heart
38	chr4:76458200-76470000	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr4:76458200-76470200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr4:76458200-76470200	Weak transcription	Aorta	Aorta
41	chr4:76458200-76470200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr4:76458200-76472000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr4:76458200-76472000	Weak transcription	Thymus	Thymus
44	chr4:76458200-76472600	Weak transcription	Pancreas	Pancrea
45	chr4:76458200-76474400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr4:76458400-76464800	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr4:76458400-76465800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr4:76458400-76467800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr4:76458400-76470000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr4:76458400-76470000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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