Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16855968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55704241	1.00[AMR][1000 genomes]
rs56008931	1.00[AMR][1000 genomes]
rs56302225	1.00[AMR][1000 genomes]
rs58239805	1.00[AMR][1000 genomes]
rs59352892	1.00[EUR][1000 genomes]
rs60294992	1.00[AMR][1000 genomes]
rs60912933	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72944360	1.00[EUR][1000 genomes]
rs72944378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72944380	1.00[EUR][1000 genomes]
rs72944394	1.00[EUR][1000 genomes]
rs73851002	1.00[AMR][1000 genomes]
rs73853517	1.00[AMR][1000 genomes]
rs73853522	1.00[AMR][1000 genomes]
rs73853529	1.00[AMR][1000 genomes]
rs73853534	1.00[AMR][1000 genomes]
rs73853535	1.00[AMR][1000 genomes]
rs73853536	1.00[AMR][1000 genomes]
rs73853537	1.00[AMR][1000 genomes]
rs73853538	1.00[AMR][1000 genomes]
rs73853544	1.00[AMR][1000 genomes]
rs73853545	1.00[AMR][1000 genomes]
rs73853552	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460815	chr3:109447463-109484302	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv591269	chr3:109447463-109496029	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109455800-109456600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:109456000-109456200	ZNF genes & repeats	Pancreas	Pancrea
3	chr3:109456000-109456600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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