Variant report
| Variant | rs72944378 |
|---|---|
| Chromosome Location | chr3:109464351-109464352 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:63952505..63954555-chr3:109463070..109465225,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168439 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs16855968 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3908359 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55704241 | 1.00[AMR][1000 genomes] |
| rs56008931 | 1.00[AMR][1000 genomes] |
| rs56302225 | 1.00[AMR][1000 genomes] |
| rs58239805 | 1.00[AMR][1000 genomes] |
| rs59352892 | 1.00[EUR][1000 genomes] |
| rs60294992 | 1.00[AMR][1000 genomes] |
| rs60912933 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72944360 | 1.00[EUR][1000 genomes] |
| rs72944380 | 1.00[EUR][1000 genomes] |
| rs72944394 | 1.00[EUR][1000 genomes] |
| rs73851002 | 1.00[AMR][1000 genomes] |
| rs73853517 | 1.00[AMR][1000 genomes] |
| rs73853522 | 1.00[AMR][1000 genomes] |
| rs73853529 | 1.00[AMR][1000 genomes] |
| rs73853534 | 1.00[AMR][1000 genomes] |
| rs73853535 | 1.00[AMR][1000 genomes] |
| rs73853536 | 1.00[AMR][1000 genomes] |
| rs73853537 | 1.00[AMR][1000 genomes] |
| rs73853538 | 1.00[AMR][1000 genomes] |
| rs73853544 | 1.00[AMR][1000 genomes] |
| rs73853545 | 1.00[AMR][1000 genomes] |
| rs73853552 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460815 | chr3:109447463-109484302 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 2 | nsv591269 | chr3:109447463-109496029 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 3 | nsv1009075 | chr3:109462019-109800029 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv591270 | chr3:109462400-109793785 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
