Variant report
| Variant | rs73853534 |
|---|---|
| Chromosome Location | chr3:109416600-109416601 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:109414982..109417591-chr3:109417920..109420582,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs16855968 | 1.00[AMR][1000 genomes] |
| rs3908359 | 1.00[AMR][1000 genomes] |
| rs55704241 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56008931 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56302225 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58239805 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60294992 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72944378 | 1.00[AMR][1000 genomes] |
| rs73851002 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853517 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853522 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853529 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853535 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853536 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853537 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853538 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853544 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853545 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73853552 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv470827 | chr3:109195046-109433855 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2555952 | chr3:109414448-109417041 | ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:109414200-109416600 | ZNF genes & repeats | Dnd41 | blood |
