Variant report

Variant	rs73853517
Chromosome Location	chr3:109378257-109378258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16855968	1.00[AMR][1000 genomes]
rs3908359	1.00[AMR][1000 genomes]
rs55704241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56008931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56302225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58239805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60294992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944378	1.00[AMR][1000 genomes]
rs73851002	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460814	chr3:109195046-109381428	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591268	chr3:109195046-109381428	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470827	chr3:109195046-109433855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv965113	chr3:109375855-109390943	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109374600-109378400	Weak transcription	Pancreas	Pancrea
2	chr3:109375400-109378600	Weak transcription	Aorta	Aorta
3	chr3:109375800-109380600	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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