Variant report

Variant	rs73853552
Chromosome Location	chr3:109448191-109448192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16855968	1.00[AMR][1000 genomes]
rs3908359	1.00[AMR][1000 genomes]
rs55704241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56008931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56302225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58239805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60294992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944378	1.00[AMR][1000 genomes]
rs73851002	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460815	chr3:109447463-109484302	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv591269	chr3:109447463-109496029	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109447800-109448400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:109448000-109448400	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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