Variant report

Variant	rs73853544
Chromosome Location	chr3:109431665-109431666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16855968	1.00[AMR][1000 genomes]
rs3908359	1.00[AMR][1000 genomes]
rs55704241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56008931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56302225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58239805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60294992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944378	1.00[AMR][1000 genomes]
rs73851002	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470827	chr3:109195046-109433855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109431400-109432800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:109431600-109432600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:109431600-109432600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:109431600-109432600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:109431600-109432800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:109431600-109432800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:109431600-109433000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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