Variant report

Variant	rs58239805
Chromosome Location	chr3:109422012-109422013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16855968	1.00[AMR][1000 genomes]
rs3908359	1.00[AMR][1000 genomes]
rs55704241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56008931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56302225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60294992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944378	1.00[AMR][1000 genomes]
rs73851002	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470827	chr3:109195046-109433855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv965391	chr3:109419757-109431296	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109418600-109423600	Enhancers	Dnd41	blood
2	chr3:109421000-109422200	Enhancers	NH-A	brain
3	chr3:109421000-109422400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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