Variant report

Variant	rs73851002
Chromosome Location	chr3:109330331-109330332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16855968	1.00[AMR][1000 genomes]
rs3908359	1.00[AMR][1000 genomes]
rs55704241	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56008931	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56302225	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58239805	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60294992	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944378	1.00[AMR][1000 genomes]
rs73853517	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853522	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853529	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853534	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853535	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853536	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853537	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853538	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853544	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853545	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853552	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460814	chr3:109195046-109381428	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591268	chr3:109195046-109381428	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470827	chr3:109195046-109433855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3394540	chr3:109326962-109330360	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109327400-109331600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:109328400-109330400	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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