Variant report

Variant	rs397834745
Chromosome Location	chr10:39102156-39102157
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759744	chr10:38677023-39154935	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv550423	chr10:38751950-39154633	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3422361	chr10:38773902-39120597	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv550434	chr10:38778034-39154633	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3424232	chr10:38807904-39121147	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2758214	chr10:38868836-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv550477	chr10:38869176-39154633	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3442702	chr10:38871309-39150949	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv469653	chr10:38943836-39132680	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv482820	chr10:38943836-39132680	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv948283	chr10:39067282-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv550543	chr10:39072549-39148308	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv550544	chr10:39075153-39140425	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv550545	chr10:39075153-39148898	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv550546	chr10:39075153-39154220	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv550547	chr10:39075153-39154633	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3328471	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3343007	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv3351317	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3395582	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv3432777	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv3435778	chr10:39075346-39154935	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv18598	chr10:39075822-39117611	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv18050	chr10:39076665-39154687	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	nsv821087	chr10:39076665-39154687	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	esv4151	chr10:39079675-39125901	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
27	esv8360	chr10:39082341-39108754	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
28	esv3409539	chr10:39082412-39110672	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
29	esv3368882	chr10:39083316-39106432	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
30	esv3411257	chr10:39083320-39112060	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
31	esv7162	chr10:39085869-39105294	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
32	esv7098	chr10:39086185-39109665	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
33	nsv550548	chr10:39088829-39124438	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
34	nsv550549	chr10:39088829-39127278	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
35	nsv550550	chr10:39088829-39130104	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
36	nsv550551	chr10:39088829-39148308	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
37	nsv550552	chr10:39088829-39154220	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	nsv550553	chr10:39088829-39154633	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	esv9671	chr10:39094316-39111113	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
40	esv3499881	chr10:39095094-39108008	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
41	esv3499882	chr10:39095094-39108008	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
42	nsv550554	chr10:39097912-39133033	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
43	nsv550555	chr10:39097912-39136170	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
44	nsv550556	chr10:39097912-39140425	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
45	nsv550557	chr10:39097912-39148898	ZNF genes & repeats Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
46	nsv550558	chr10:39097912-39154633	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
47	esv7561	chr10:39099411-39111308	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
48	esv4872	chr10:39099443-39154855	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
49	esv3426349	chr10:39101242-39110154	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
50	esv7657	chr10:39101292-39111309	ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39102200	ZNF genes & repeats	Brain Anterior Caudate	brain
3	chr10:39076600-39102400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
4	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
5	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
7	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
8	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
10	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
12	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
14	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
17	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
20	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
22	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
23	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
24	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
25	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
26	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
27	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
28	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
29	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
30	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr10:39076800-39111400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
32	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
33	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
34	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
35	chr10:39093800-39130000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
36	chr10:39093800-39155000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr10:39096000-39142000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
38	chr10:39096200-39102200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
39	chr10:39096400-39102200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:39096600-39121600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:39100400-39102200	ZNF genes & repeats	K562	blood
42	chr10:39100400-39113200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
43	chr10:39101200-39117600	ZNF genes & repeats	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links