Variant report

Variant	rs4142763
Chromosome Location	chr1:66998036-66998037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:66996735-67003737	IMR90	lung:	n/a	n/a
2	POLR2A	chr1:66997970-67000478	HUVEC	blood vessel:	n/a	n/a
3	MAZ	chr1:66997994-67000458	IMR90	lung:	n/a	chr1:66998876-66998886
4	POLR2A	chr1:66997967-67000176	HUVEC	blood vessel:	n/a	n/a
5	MXI1	chr1:66998034-67001342	IMR90	lung:	n/a	n/a
6	CHD1	chr1:66997255-67003973	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
SGIP1	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10889624	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10889625	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11208903	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12143964	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1338184	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1338194	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1338200	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1415974	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1415984	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1547737	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1856315	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1947083	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2121051	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2859914	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4655494	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6588203	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6588204	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6691033	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7354930	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7354983	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7355221	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7540195	0.81[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7543607	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs967322	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs967325	0.95[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs984409	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs994396	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66988400-66998200	Weak transcription	Osteobl	bone
2	chr1:66991800-66998600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:66993600-66998200	Weak transcription	NHEK	skin
4	chr1:66996200-66998200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:66997200-66998200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:66997200-66998200	Enhancers	HUVEC	blood vessel
7	chr1:66997400-66998200	Enhancers	NHDF-Ad	bronchial
8	chr1:66997400-66998400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:66997400-66998400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:66997400-66998400	Enhancers	Brain Substantia Nigra	brain
11	chr1:66997400-66998400	Weak transcription	Left Ventricle	heart
12	chr1:66997600-66998200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:66997600-66998400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:66997600-66998600	Enhancers	Fetal Heart	heart
15	chr1:66997800-66998200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:66997800-66998200	Bivalent Enhancer	Primary B cells from cord blood	blood
17	chr1:66997800-66998200	Enhancers	Primary T cells from cord blood	blood
18	chr1:66997800-66998200	Active TSS	NHLF	lung
19	chr1:66997800-66998600	Enhancers	Fetal Brain Male	brain
20	chr1:66998000-66998200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
21	chr1:66998000-66998200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr1:66998000-66998200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:66998000-66998200	Enhancers	Primary hematopoietic stem cells	blood
24	chr1:66998000-66998200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr1:66998000-66998200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:66998000-66998200	Enhancers	Brain Germinal Matrix	brain
27	chr1:66998000-66998200	Enhancers	Brain Hippocampus Middle	brain
28	chr1:66998000-66998400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
29	chr1:66998000-66998400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
30	chr1:66998000-66998400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
31	chr1:66998000-66998400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr1:66998000-66998600	Enhancers	Fetal Kidney	kidney
33	chr1:66998000-66999000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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