Variant report

Variant	rs4302966
Chromosome Location	chr9:100529755-100529756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1398229	1.00[AMR][1000 genomes]
rs55903016	1.00[AMR][1000 genomes]
rs56263942	1.00[AMR][1000 genomes]
rs57456706	1.00[AMR][1000 genomes]
rs58359757	1.00[AMR][1000 genomes]
rs60307706	1.00[AMR][1000 genomes]
rs61419337	1.00[AMR][1000 genomes]
rs73655153	1.00[AMR][1000 genomes]
rs73655155	1.00[AMR][1000 genomes]
rs73655156	1.00[AMR][1000 genomes]
rs73655157	1.00[AMR][1000 genomes]
rs73655161	1.00[AMR][1000 genomes]
rs73655162	1.00[AMR][1000 genomes]
rs73655164	1.00[AMR][1000 genomes]
rs73655175	1.00[AMR][1000 genomes]
rs73655176	1.00[AMR][1000 genomes]
rs73655177	1.00[AMR][1000 genomes]
rs73656837	1.00[AMR][1000 genomes]
rs73656843	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100526600-100533200	Weak transcription	Fetal Intestine Small	intestine
2	chr9:100528000-100531400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:100528200-100532400	Enhancers	NHDF-Ad	bronchial
4	chr9:100528800-100530800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:100528800-100530800	Weak transcription	NH-A	brain
6	chr9:100528800-100531000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:100529000-100530200	Weak transcription	Osteobl	bone
8	chr9:100529000-100530600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:100529000-100531000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:100529000-100531400	Weak transcription	Esophagus	oesophagus
11	chr9:100529200-100530800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:100529200-100530800	Weak transcription	HMEC	breast
13	chr9:100529200-100530800	Weak transcription	HSMMtube	muscle
14	chr9:100529200-100530800	Weak transcription	NHEK	skin
15	chr9:100529200-100531000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:100529200-100531000	Weak transcription	HSMM	muscle
17	chr9:100529200-100531400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:100529400-100530400	Weak transcription	Hela-S3	cervix
19	chr9:100529400-100531400	Weak transcription	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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