Variant report

Variant	rs60307706
Chromosome Location	chr9:100525496-100525497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1398229	1.00[AMR][1000 genomes]
rs4302966	1.00[AMR][1000 genomes]
rs55903016	1.00[AMR][1000 genomes]
rs56263942	1.00[AMR][1000 genomes]
rs57456706	1.00[AMR][1000 genomes]
rs58359757	1.00[AMR][1000 genomes]
rs61419337	1.00[AMR][1000 genomes]
rs73655153	1.00[AMR][1000 genomes]
rs73655155	1.00[AMR][1000 genomes]
rs73655156	1.00[AMR][1000 genomes]
rs73655157	1.00[AMR][1000 genomes]
rs73655161	1.00[AMR][1000 genomes]
rs73655162	1.00[AMR][1000 genomes]
rs73655164	1.00[AMR][1000 genomes]
rs73655175	1.00[AMR][1000 genomes]
rs73655176	1.00[AMR][1000 genomes]
rs73655177	1.00[AMR][1000 genomes]
rs73656837	1.00[AMR][1000 genomes]
rs73656843	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100522400-100526200	Weak transcription	Right Atrium	heart
2	chr9:100523600-100527800	Weak transcription	Hela-S3	cervix
3	chr9:100524000-100526600	Enhancers	Fetal Intestine Small	intestine
4	chr9:100524000-100526800	Enhancers	Fetal Intestine Large	intestine
5	chr9:100525000-100525800	Enhancers	Adipose Nuclei	Adipose
6	chr9:100525400-100525600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:100525400-100525600	Enhancers	Esophagus	oesophagus
8	chr9:100525400-100525800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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