Variant report
| Variant | rs73655155 |
|---|---|
| Chromosome Location | chr9:100482557-100482558 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:100477106..100478683-chr9:100480479..100483251,2 | MCF-7 | breast: | |
| 2 | chr9:100480674..100483581-chr9:100484932..100487285,2 | K562 | blood: | |
| 3 | chr9:100476626..100478474-chr9:100481765..100484991,3 | MCF-7 | breast: | |
| 4 | chr9:100471241..100474154-chr9:100481493..100483041,2 | K562 | blood: | |
| 5 | chr9:100481943..100484213-chr9:100684517..100686414,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000136932 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1398229 | 1.00[AMR][1000 genomes] |
| rs4302966 | 1.00[AMR][1000 genomes] |
| rs55903016 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56263942 | 1.00[AMR][1000 genomes] |
| rs57456706 | 1.00[AMR][1000 genomes] |
| rs58359757 | 1.00[AMR][1000 genomes] |
| rs60307706 | 1.00[AMR][1000 genomes] |
| rs61419337 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73655153 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73655156 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73655157 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73655161 | 1.00[AMR][1000 genomes] |
| rs73655162 | 1.00[AMR][1000 genomes] |
| rs73655164 | 1.00[AMR][1000 genomes] |
| rs73655175 | 1.00[AMR][1000 genomes] |
| rs73655176 | 1.00[AMR][1000 genomes] |
| rs73655177 | 1.00[AMR][1000 genomes] |
| rs73656837 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73656843 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893610 | chr9:100324086-100496160 | Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| 2 | nsv1043753 | chr9:100458109-100599265 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:100480400-100482600 | Weak transcription | HSMMtube | muscle |
