Variant report

Variant	rs61419337
Chromosome Location	chr9:100361733-100361734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100262755..100264674-chr9:100361265..100363370,2	MCF-7	breast:
2	chr9:100229670..100231285-chr9:100361449..100364307,2	MCF-7	breast:
3	chr9:100178564..100180754-chr9:100361025..100362737,2	K562	blood:
4	chr9:100231978..100232960-chr9:100360689..100361959,5	MCF-7	breast:
5	chr9:100361131..100364262-chr9:100393910..100395873,3	MCF-7	breast:
6	chr9:100360288..100362681-chr9:100379857..100382026,2	K562	blood:
7	chr9:100359880..100362993-chr9:100364849..100367114,3	K562	blood:
8	chr9:100179254..100180802-chr9:100361025..100362734,2	K562	blood:
9	chr9:100361363..100362991-chr9:100365453..100368100,2	MCF-7	breast:
10	chr9:100230597..100231650-chr9:100360653..100361771,14	K562	blood:
11	chr9:100230345..100232792-chr9:100360148..100362723,2	K562	blood:
12	chr9:100355062..100357246-chr9:100361025..100362574,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136842	Chromatin interaction
ENSG00000136925	Chromatin interaction
ENSG00000196116	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1398229	1.00[AMR][1000 genomes]
rs4302966	1.00[AMR][1000 genomes]
rs55903016	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56263942	1.00[AMR][1000 genomes]
rs57456706	1.00[AMR][1000 genomes]
rs58359757	1.00[AMR][1000 genomes]
rs60307706	1.00[AMR][1000 genomes]
rs73655153	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655155	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655156	1.00[AMR][1000 genomes]
rs73655157	1.00[AMR][1000 genomes]
rs73655161	1.00[AMR][1000 genomes]
rs73655162	1.00[AMR][1000 genomes]
rs73655164	1.00[AMR][1000 genomes]
rs73655175	1.00[AMR][1000 genomes]
rs73655176	1.00[AMR][1000 genomes]
rs73655177	1.00[AMR][1000 genomes]
rs73656826	0.83[AFR][1000 genomes]
rs73656837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100333600-100361800	Weak transcription	Gastric	stomach
2	chr9:100348800-100384000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:100350400-100361800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr9:100351200-100361800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:100353000-100362800	Weak transcription	Esophagus	oesophagus
6	chr9:100353200-100362200	Enhancers	Fetal Brain Male	brain
7	chr9:100353200-100363200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:100354800-100363000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:100356800-100362400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:100357000-100362800	Weak transcription	HSMM	muscle
11	chr9:100357200-100363000	Weak transcription	Pancreas	Pancrea
12	chr9:100357200-100363800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:100357400-100363000	Weak transcription	HSMMtube	muscle
14	chr9:100358400-100362000	Enhancers	Right Atrium	heart
15	chr9:100359000-100362400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:100359000-100363000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:100359200-100361800	Enhancers	Fetal Brain Female	brain
18	chr9:100359200-100363400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:100359600-100361800	Weak transcription	Fetal Stomach	stomach
20	chr9:100359800-100362200	Enhancers	Fetal Heart	heart
21	chr9:100360000-100361800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:100360000-100361800	Weak transcription	Primary T cells from cord blood	blood
23	chr9:100360000-100364400	Weak transcription	Fetal Kidney	kidney
24	chr9:100360200-100361800	Weak transcription	Primary B cells from cord blood	blood
25	chr9:100360200-100362400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:100360200-100362600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:100360400-100362400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:100360400-100363000	Weak transcription	Brain Germinal Matrix	brain
29	chr9:100360600-100362000	Enhancers	Psoas Muscle	Psoas
30	chr9:100360600-100363600	Weak transcription	NHEK	skin
31	chr9:100360800-100361800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr9:100360800-100362200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:100360800-100363200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr9:100361000-100361800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:100361000-100361800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:100361000-100361800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr9:100361000-100362000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:100361000-100362200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:100361000-100362200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr9:100361000-100362400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr9:100361000-100362400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr9:100361000-100362400	Weak transcription	Osteobl	bone
43	chr9:100361000-100362600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr9:100361000-100362600	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr9:100361000-100362600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr9:100361000-100362600	Weak transcription	A549	lung
47	chr9:100361000-100362800	Weak transcription	Colon Smooth Muscle	Colon
48	chr9:100361000-100362800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr9:100361000-100362800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr9:100361000-100362800	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links