Variant report

Variant	rs73655176
Chromosome Location	chr9:100528010-100528011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1398229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4302966	1.00[AMR][1000 genomes]
rs55903016	1.00[AMR][1000 genomes]
rs56263942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56350461	0.87[AFR][1000 genomes]
rs57456706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58359757	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60307706	1.00[AMR][1000 genomes]
rs61419337	1.00[AMR][1000 genomes]
rs73655153	1.00[AMR][1000 genomes]
rs73655155	1.00[AMR][1000 genomes]
rs73655156	1.00[AMR][1000 genomes]
rs73655157	1.00[AMR][1000 genomes]
rs73655161	1.00[AMR][1000 genomes]
rs73655162	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655164	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656837	1.00[AMR][1000 genomes]
rs73656843	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100525600-100528600	Weak transcription	Esophagus	oesophagus
2	chr9:100526600-100533200	Weak transcription	Fetal Intestine Small	intestine
3	chr9:100527800-100529200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:100527800-100529200	Enhancers	HSMMtube	muscle
5	chr9:100527800-100529400	Enhancers	Hela-S3	cervix
6	chr9:100527800-100529400	Enhancers	NHLF	lung
7	chr9:100528000-100529200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:100528000-100529200	Enhancers	HMEC	breast
9	chr9:100528000-100529200	Enhancers	HSMM	muscle
10	chr9:100528000-100529200	Enhancers	NHEK	skin
11	chr9:100528000-100531400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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