Variant report

Variant	rs57456706
Chromosome Location	chr9:100530698-100530699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100529991..100532148-chr9:100565472..100567018,2	MCF-7	breast:
2	chr9:100524684..100526185-chr9:100530606..100532510,2	MCF-7	breast:
3	chr9:100513746..100515614-chr9:100528271..100531174,2	K562	blood:
4	chr9:100530381..100532814-chr9:100532881..100535803,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1398229	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4302966	1.00[AMR][1000 genomes]
rs55903016	1.00[AMR][1000 genomes]
rs56263942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56350461	0.83[AFR][1000 genomes]
rs58359757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60307706	1.00[AMR][1000 genomes]
rs61419337	1.00[AMR][1000 genomes]
rs73655153	1.00[AMR][1000 genomes]
rs73655155	1.00[AMR][1000 genomes]
rs73655156	1.00[AMR][1000 genomes]
rs73655157	1.00[AMR][1000 genomes]
rs73655161	1.00[AMR][1000 genomes]
rs73655162	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655164	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655175	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655176	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655177	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656837	1.00[AMR][1000 genomes]
rs73656843	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100526600-100533200	Weak transcription	Fetal Intestine Small	intestine
2	chr9:100528000-100531400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:100528200-100532400	Enhancers	NHDF-Ad	bronchial
4	chr9:100528800-100530800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:100528800-100530800	Weak transcription	NH-A	brain
6	chr9:100528800-100531000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:100529000-100531000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:100529000-100531400	Weak transcription	Esophagus	oesophagus
9	chr9:100529200-100530800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:100529200-100530800	Weak transcription	HMEC	breast
11	chr9:100529200-100530800	Weak transcription	HSMMtube	muscle
12	chr9:100529200-100530800	Weak transcription	NHEK	skin
13	chr9:100529200-100531000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:100529200-100531000	Weak transcription	HSMM	muscle
15	chr9:100529200-100531400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:100529400-100531400	Weak transcription	NHLF	lung
17	chr9:100530200-100531400	Enhancers	Osteobl	bone
18	chr9:100530400-100531600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
19	chr9:100530400-100532200	Enhancers	Hela-S3	cervix
20	chr9:100530600-100531000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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