Variant report

Variant	rs73655164
Chromosome Location	chr9:100510369-100510370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:47360676..47363617-chr9:100509407..100511558,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1398229	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4302966	1.00[AMR][1000 genomes]
rs55903016	1.00[AMR][1000 genomes]
rs56263942	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56350461	0.91[AFR][1000 genomes]
rs57456706	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58359757	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60307706	1.00[AMR][1000 genomes]
rs61419337	1.00[AMR][1000 genomes]
rs73655153	1.00[AMR][1000 genomes]
rs73655155	1.00[AMR][1000 genomes]
rs73655156	1.00[AMR][1000 genomes]
rs73655157	1.00[AMR][1000 genomes]
rs73655161	1.00[AMR][1000 genomes]
rs73655162	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655175	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655176	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655177	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656837	1.00[AMR][1000 genomes]
rs73656843	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100504000-100514000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:100507200-100513600	Enhancers	Fetal Intestine Small	intestine
3	chr9:100509000-100511000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:100509000-100513200	Enhancers	Fetal Intestine Large	intestine
5	chr9:100509200-100510600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:100509200-100511000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:100509400-100510400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:100509400-100511200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:100509400-100511400	Enhancers	HSMMtube	muscle
10	chr9:100509400-100511600	Enhancers	Adipose Nuclei	Adipose
11	chr9:100509600-100510400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr9:100509600-100510600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:100509600-100510600	Enhancers	HSMM	muscle
14	chr9:100509600-100511000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:100509600-100511000	Enhancers	Esophagus	oesophagus
16	chr9:100509600-100511200	Enhancers	Placenta	Placenta
17	chr9:100509800-100510600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr9:100510000-100510800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:100510000-100510800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:100510200-100510600	Enhancers	Hela-S3	cervix

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