Variant report

Variant	rs73655162
Chromosome Location	chr9:100498204-100498205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1398229	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4302966	1.00[AMR][1000 genomes]
rs55903016	1.00[AMR][1000 genomes]
rs56263942	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56350461	1.00[AFR][1000 genomes]
rs57456706	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58359757	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60307706	1.00[AMR][1000 genomes]
rs61419337	1.00[AMR][1000 genomes]
rs73655153	1.00[AMR][1000 genomes]
rs73655155	1.00[AMR][1000 genomes]
rs73655156	1.00[AMR][1000 genomes]
rs73655157	1.00[AMR][1000 genomes]
rs73655161	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655164	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655175	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655176	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655177	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656837	1.00[AMR][1000 genomes]
rs73656843	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100491000-100503200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:100492800-100503200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:100493000-100503000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:100495800-100502600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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