Variant report

Variant	rs73655177
Chromosome Location	chr9:100528429-100528430
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100526763..100529492-chr9:100745429..100748307,2	MCF-7	breast:
2	chr9:100513746..100515614-chr9:100528271..100531174,2	K562	blood:
3	chr9:100526425..100528697-chr9:100814086..100815936,2	K562	blood:

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1398229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4302966	1.00[AMR][1000 genomes]
rs55903016	1.00[AMR][1000 genomes]
rs56263942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56350461	0.87[AFR][1000 genomes]
rs57456706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58359757	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60307706	1.00[AMR][1000 genomes]
rs61419337	1.00[AMR][1000 genomes]
rs73655153	1.00[AMR][1000 genomes]
rs73655155	1.00[AMR][1000 genomes]
rs73655156	1.00[AMR][1000 genomes]
rs73655157	1.00[AMR][1000 genomes]
rs73655161	1.00[AMR][1000 genomes]
rs73655162	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655164	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73656837	1.00[AMR][1000 genomes]
rs73656843	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100525600-100528600	Weak transcription	Esophagus	oesophagus
2	chr9:100526600-100533200	Weak transcription	Fetal Intestine Small	intestine
3	chr9:100527800-100529200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:100527800-100529200	Enhancers	HSMMtube	muscle
5	chr9:100527800-100529400	Enhancers	Hela-S3	cervix
6	chr9:100527800-100529400	Enhancers	NHLF	lung
7	chr9:100528000-100529200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:100528000-100529200	Enhancers	HMEC	breast
9	chr9:100528000-100529200	Enhancers	HSMM	muscle
10	chr9:100528000-100529200	Enhancers	NHEK	skin
11	chr9:100528000-100531400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:100528200-100528800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:100528200-100528800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:100528200-100529000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:100528200-100529000	Enhancers	Osteobl	bone
16	chr9:100528200-100529200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:100528200-100529200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr9:100528200-100532400	Enhancers	NHDF-Ad	bronchial
19	chr9:100528400-100528600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:100528400-100529000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:100528400-100529400	Enhancers	K562	blood

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