Variant report

Variant	rs55817816
Chromosome Location	chr6:134431333-134431334
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134426259..134427871-chr6:134429306..134432091,2	MCF-7	breast:
2	chr6:134430905..134433132-chr6:134494034..134496978,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118515	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11961400	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11961417	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11962996	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11963187	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11964465	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11964762	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11968128	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11968888	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11968897	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11970500	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11970523	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17063374	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17063379	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17063385	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17063388	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17063395	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4429965	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4429966	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55649880	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55756731	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55861927	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55953601	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55978141	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56068977	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56096758	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56104368	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56117836	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56163055	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56196039	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56221261	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56280348	0.84[EUR][1000 genomes]
rs56292241	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56311826	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56315103	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56352446	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56393138	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56935348	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58451288	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58486630	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58831076	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59511756	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59829206	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60289345	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60618660	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60762745	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61211919	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73556726	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556732	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556733	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556750	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556753	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556756	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73556759	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556761	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556763	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556765	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556771	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73556773	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73556781	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73556782	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73556797	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73558605	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73558613	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73558620	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73558622	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73558625	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73558626	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134416200-134438600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:134430200-134432000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr6:134430400-134431400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:134430400-134432000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:134430400-134432000	Enhancers	Hela-S3	cervix
6	chr6:134430600-134431400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:134430600-134431400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:134430600-134431400	Enhancers	Placenta	Placenta
9	chr6:134430800-134431400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:134430800-134431400	Enhancers	HMEC	breast
11	chr6:134430800-134431400	Enhancers	Osteobl	bone
12	chr6:134431200-134431400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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