Variant report

Variant	rs56068977
Chromosome Location	chr6:134440255-134440256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134437318..134440387-chr6:134494283..134498091,4	MCF-7	breast:
2	chr6:134439720..134441669-chr6:134451006..134453817,2	MCF-7	breast:
3	chr22:19959804..19961304-chr6:134437465..134440337,2	MCF-7	breast:
4	chr6:134438581..134440830-chr8:117739985..117742395,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118515	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11961400	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961417	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962996	0.94[EUR][1000 genomes]
rs11963187	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964465	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964762	0.94[EUR][1000 genomes]
rs11968128	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968888	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968897	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968916	0.95[ASN][1000 genomes]
rs11970500	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970523	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063374	0.94[EUR][1000 genomes]
rs17063379	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17063385	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063388	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063395	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55649880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55756731	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55817816	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55861927	0.92[EUR][1000 genomes]
rs55953601	0.92[EUR][1000 genomes]
rs55978141	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56096758	0.94[EUR][1000 genomes]
rs56104368	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56117836	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56163055	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196039	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56221261	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56280348	0.92[EUR][1000 genomes]
rs56292241	0.92[EUR][1000 genomes]
rs56311826	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56315103	0.92[EUR][1000 genomes]
rs56352446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56393138	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56935348	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58451288	0.94[EUR][1000 genomes]
rs58486630	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58831076	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59511756	0.94[EUR][1000 genomes]
rs59829206	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60289345	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60618660	0.92[EUR][1000 genomes]
rs60762745	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61211919	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556726	0.92[EUR][1000 genomes]
rs73556732	0.92[EUR][1000 genomes]
rs73556733	0.92[EUR][1000 genomes]
rs73556750	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556753	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556756	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73556759	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556761	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556763	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556765	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556771	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556773	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556781	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556782	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556797	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558605	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558613	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558620	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558622	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558625	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558626	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749701	0.95[ASN][1000 genomes]
rs7767616	0.95[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134438800-134440400	Enhancers	HSMMtube	muscle
2	chr6:134439000-134453600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:134439200-134445000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:134439200-134445000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:134439600-134445000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:134439600-134445000	Weak transcription	Brain Angular Gyrus	brain
7	chr6:134439600-134445000	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:134439800-134445000	Weak transcription	Brain Anterior Caudate	brain

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