Variant report

Variant	rs58451288
Chromosome Location	chr6:134435705-134435706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134434502..134436797-chr6:134495349..134498640,3	MCF-7	breast:
2	chr6:134435161..134436840-chr6:135201744..135204617,2	K562	blood:

Variant related genes	Relation type
ENSG00000118515	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11961400	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11961417	0.94[EUR][1000 genomes]
rs11962996	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963187	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11964465	0.94[EUR][1000 genomes]
rs11964762	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968128	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11968888	0.94[EUR][1000 genomes]
rs11968897	0.94[EUR][1000 genomes]
rs11970500	0.94[EUR][1000 genomes]
rs11970523	0.94[EUR][1000 genomes]
rs17063374	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17063379	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17063385	0.94[EUR][1000 genomes]
rs17063388	0.94[EUR][1000 genomes]
rs17063395	0.94[EUR][1000 genomes]
rs4429965	0.94[EUR][1000 genomes]
rs4429966	0.94[EUR][1000 genomes]
rs55649880	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55756731	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55817816	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55861927	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55953601	0.98[EUR][1000 genomes]
rs55978141	0.94[EUR][1000 genomes]
rs56068977	0.94[EUR][1000 genomes]
rs56096758	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56104368	0.94[EUR][1000 genomes]
rs56117836	0.94[EUR][1000 genomes]
rs56163055	0.94[EUR][1000 genomes]
rs56196039	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56221261	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56280348	0.86[EUR][1000 genomes]
rs56292241	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56311826	0.94[EUR][1000 genomes]
rs56315103	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56352446	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56393138	0.94[EUR][1000 genomes]
rs56935348	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58486630	0.94[EUR][1000 genomes]
rs58831076	0.94[EUR][1000 genomes]
rs59511756	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59829206	0.94[EUR][1000 genomes]
rs60289345	0.94[EUR][1000 genomes]
rs60618660	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60762745	0.94[EUR][1000 genomes]
rs61211919	0.82[EUR][1000 genomes]
rs73556726	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73556732	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73556733	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73556750	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556753	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556756	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73556759	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556761	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556763	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556765	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556771	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73556773	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73556781	0.94[EUR][1000 genomes]
rs73556782	0.94[EUR][1000 genomes]
rs73556797	0.94[EUR][1000 genomes]
rs73558605	0.94[EUR][1000 genomes]
rs73558613	0.94[EUR][1000 genomes]
rs73558620	0.94[EUR][1000 genomes]
rs73558622	0.94[EUR][1000 genomes]
rs73558625	0.92[EUR][1000 genomes]
rs73558626	0.92[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134416200-134438600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:134431400-134438000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:134431400-134438600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:134432800-134436800	Enhancers	Brain Cingulate Gyrus	brain
5	chr6:134433800-134436400	Enhancers	Brain Hippocampus Middle	brain
6	chr6:134433800-134437000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr6:134434400-134438600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:134434600-134438600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:134435000-134436600	Enhancers	Brain Anterior Caudate	brain
10	chr6:134435000-134437400	Enhancers	Brain Substantia Nigra	brain
11	chr6:134435200-134435800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:134435200-134436800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:134435200-134437200	Enhancers	Brain Angular Gyrus	brain
14	chr6:134435600-134436400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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