Variant report

Variant	rs56221261
Chromosome Location	chr6:134438949-134438950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:134438599-134438997	MCF-7	breast:	n/a	n/a
2	NR2F2	chr6:134438288-134438993	MCF-7	breast:	n/a	n/a
3	GATA3	chr6:134438186-134439047	MCF-7	breast:	n/a	chr6:134438453-134438460
4	GATA3	chr6:134438344-134439080	MCF-7	breast:	n/a	chr6:134438453-134438460
5	POLR2A	chr6:134438554-134439226	MCF-7	breast:	n/a	n/a
6	MAX	chr6:134438418-134439018	MCF-7	breast:	n/a	n/a
7	ZNF217	chr6:134438354-134438963	MCF-7	breast:	n/a	n/a
8	EP300	chr6:134438186-134438989	MCF-7	breast:	n/a	chr6:134438774-134438790
9	HDAC2	chr6:134438302-134438971	MCF-7	breast:	n/a	chr6:134438386-134438395
10	HA-E2F1	chr6:134438379-134439011	MCF-7	breast:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:134272279..134275181-chr6:134437932..134439569,2	K562	blood:
2	chr6:134437318..134440387-chr6:134494283..134498091,4	MCF-7	breast:
3	chr6:134438335..134439018-chr6:135532128..135532990,2	MCF-7	breast:
4	chr22:19959804..19961304-chr6:134437465..134440337,2	MCF-7	breast:
5	chr6:134271864..134273902-chr6:134437513..134439516,3	K562	blood:
6	chr6:134438581..134440830-chr8:117739985..117742395,2	MCF-7	breast:
7	chr6:134426746..134427261-chr6:134438249..134438973,2	MCF-7	breast:
8	chr6:134427000..134427661-chr6:134438260..134438991,4	MCF-7	breast:

No data

Variant related genes	Relation type
HMGA1P7	TF binding region
ENSG00000118515	Chromatin interaction
ENSG00000028839	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11961400	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11961417	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11962996	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11963187	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11964465	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11964762	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11968128	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11968888	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11968897	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11968916	0.90[ASN][1000 genomes]
rs11970500	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11970523	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17063374	0.94[EUR][1000 genomes]
rs17063379	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063385	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17063388	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17063395	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4429965	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4429966	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55649880	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55756731	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55817816	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55861927	0.92[EUR][1000 genomes]
rs55953601	0.92[EUR][1000 genomes]
rs55978141	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56068977	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56096758	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56104368	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56117836	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56163055	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56196039	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56280348	0.92[EUR][1000 genomes]
rs56292241	0.92[EUR][1000 genomes]
rs56311826	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56315103	0.92[EUR][1000 genomes]
rs56352446	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56393138	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56935348	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58451288	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58486630	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58831076	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59511756	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59829206	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60289345	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60618660	0.92[EUR][1000 genomes]
rs60762745	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61211919	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556726	0.92[EUR][1000 genomes]
rs73556732	0.92[EUR][1000 genomes]
rs73556733	0.92[EUR][1000 genomes]
rs73556750	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556753	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556756	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73556759	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556761	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556763	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556765	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556771	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556773	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556781	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556782	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556797	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73558605	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73558613	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73558620	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73558622	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73558625	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73558626	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7749701	0.90[ASN][1000 genomes]
rs7767616	0.90[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134438200-134439200	Enhancers	Primary hematopoietic stem cells	blood
2	chr6:134438200-134439200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:134438400-134439000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:134438400-134439000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:134438400-134439000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:134438400-134439000	Enhancers	NH-A	brain
7	chr6:134438400-134439200	Flanking Active TSS	Brain Hippocampus Middle	brain
8	chr6:134438400-134439400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:134438400-134439400	Enhancers	HSMM	muscle
10	chr6:134438400-134439600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:134438400-134439600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:134438600-134439000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:134438600-134439000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:134438600-134439000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:134438600-134439000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:134438600-134439000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
17	chr6:134438600-134439000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr6:134438600-134439000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:134438600-134439000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:134438600-134439000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr6:134438600-134439200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:134438600-134439200	Flanking Active TSS	Brain Angular Gyrus	brain
23	chr6:134438600-134439200	Flanking Active TSS	Brain Cingulate Gyrus	brain
24	chr6:134438600-134439200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr6:134438600-134439400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr6:134438600-134439400	Enhancers	Brain Substantia Nigra	brain
27	chr6:134438600-134439600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:134438800-134439000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:134438800-134439000	Enhancers	Placenta	Placenta
30	chr6:134438800-134439000	Bivalent Enhancer	Fetal Thymus	thymus
31	chr6:134438800-134439000	Enhancers	Thymus	Thymus
32	chr6:134438800-134439000	Flanking Active TSS	Osteobl	bone
33	chr6:134438800-134439200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:134438800-134439200	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr6:134438800-134440400	Enhancers	HSMMtube	muscle

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