Variant report

Variant	rs73556750
Chromosome Location	chr6:134436549-134436550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134434502..134436797-chr6:134495349..134498640,3	MCF-7	breast:
2	chr6:134435161..134436840-chr6:135201744..135204617,2	K562	blood:

Variant related genes	Relation type
ENSG00000118515	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11961400	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11961417	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11962996	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11963187	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11964465	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11964762	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968128	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968888	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968897	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968916	0.84[ASN][1000 genomes]
rs11970500	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11970523	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17063374	0.92[EUR][1000 genomes]
rs17063379	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17063385	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17063388	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17063395	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4429965	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4429966	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55649880	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55756731	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55817816	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55861927	0.90[EUR][1000 genomes]
rs55953601	0.90[EUR][1000 genomes]
rs55978141	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56068977	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56096758	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56104368	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56117836	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56163055	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56196039	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56221261	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56280348	0.87[EUR][1000 genomes]
rs56292241	0.91[EUR][1000 genomes]
rs56311826	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56315103	0.90[EUR][1000 genomes]
rs56352446	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56393138	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56935348	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58451288	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58486630	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58831076	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59511756	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59829206	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60289345	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60618660	0.91[EUR][1000 genomes]
rs60762745	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61211919	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556726	0.90[EUR][1000 genomes]
rs73556732	0.90[EUR][1000 genomes]
rs73556733	0.90[EUR][1000 genomes]
rs73556753	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556756	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73556759	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556761	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556763	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556765	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556771	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556773	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556781	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556782	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556797	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73558605	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73558613	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73558620	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73558622	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73558625	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73558626	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7749701	0.84[ASN][1000 genomes]
rs7767616	0.84[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134416200-134438600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:134431400-134438000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:134431400-134438600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:134432800-134436800	Enhancers	Brain Cingulate Gyrus	brain
5	chr6:134433800-134437000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr6:134434400-134438600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:134434600-134438600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:134435000-134436600	Enhancers	Brain Anterior Caudate	brain
9	chr6:134435000-134437400	Enhancers	Brain Substantia Nigra	brain
10	chr6:134435200-134436800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:134435200-134437200	Enhancers	Brain Angular Gyrus	brain
12	chr6:134435800-134436600	Weak transcription	Right Atrium	heart
13	chr6:134436000-134436600	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr6:134436000-134436800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr6:134436200-134436800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:134436200-134437000	Bivalent Enhancer	Fetal Stomach	stomach
17	chr6:134436400-134436600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:134436400-134436600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:134436400-134436600	Bivalent Enhancer	Adipose Nuclei	Adipose
20	chr6:134436400-134436600	Bivalent Enhancer	Left Ventricle	heart
21	chr6:134436400-134436800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:134436400-134436800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:134436400-134436800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:134436400-134436800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:134436400-134436800	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr6:134436400-134436800	Enhancers	Fetal Brain Female	brain
27	chr6:134436400-134436800	Enhancers	Ovary	ovary
28	chr6:134436400-134436800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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