Variant report

Variant	rs73556763
Chromosome Location	chr6:134436951-134436952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:134436784-134437064	MCF-7	breast:	n/a	n/a
2	ZNF263	chr6:134435805-134437044	K562	blood:	n/a	chr6:134436307-134436328
3	ESR1	chr6:134436766-134436998	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
HMGA1P7	TF binding region

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11961400	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11961417	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11962996	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11963187	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11964465	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11964762	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968128	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968888	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968897	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11968916	0.84[ASN][1000 genomes]
rs11970500	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11970523	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17063374	0.95[EUR][1000 genomes]
rs17063379	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17063385	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17063388	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17063395	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4429965	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4429966	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55649880	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55756731	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55817816	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55861927	0.94[EUR][1000 genomes]
rs55953601	0.94[EUR][1000 genomes]
rs55978141	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56068977	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56096758	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56104368	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56117836	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56163055	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56196039	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56221261	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56280348	0.90[EUR][1000 genomes]
rs56292241	0.94[EUR][1000 genomes]
rs56311826	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56315103	0.94[EUR][1000 genomes]
rs56352446	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56393138	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56935348	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58451288	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58486630	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58831076	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59511756	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59829206	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60289345	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60618660	0.94[EUR][1000 genomes]
rs60762745	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61211919	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556726	0.94[EUR][1000 genomes]
rs73556732	0.94[EUR][1000 genomes]
rs73556733	0.94[EUR][1000 genomes]
rs73556750	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556753	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556756	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73556759	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556765	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556771	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556773	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556781	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556782	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556797	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73558605	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73558613	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73558620	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73558622	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73558625	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73558626	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7749701	0.84[ASN][1000 genomes]
rs7767616	0.84[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134416200-134438600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:134431400-134438000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:134431400-134438600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:134433800-134437000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr6:134434400-134438600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:134434600-134438600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:134435000-134437400	Enhancers	Brain Substantia Nigra	brain
8	chr6:134435200-134437200	Enhancers	Brain Angular Gyrus	brain
9	chr6:134436200-134437000	Bivalent Enhancer	Fetal Stomach	stomach
10	chr6:134436600-134437000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:134436600-134437000	Enhancers	Adipose Nuclei	Adipose
12	chr6:134436600-134437000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:134436600-134438400	Weak transcription	Brain Anterior Caudate	brain
14	chr6:134436800-134437000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:134436800-134437000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:134436800-134437000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
17	chr6:134436800-134437000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr6:134436800-134437000	Bivalent Enhancer	HUVEC	blood vessel
19	chr6:134436800-134437000	Bivalent Enhancer	NHEK	skin
20	chr6:134436800-134437200	Flanking Active TSS	Brain Cingulate Gyrus	brain
21	chr6:134436800-134437200	Bivalent Enhancer	Fetal Lung	lung
22	chr6:134436800-134437200	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr6:134436800-134437600	Enhancers	Brain Hippocampus Middle	brain
24	chr6:134436800-134438400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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