Variant report

Variant	rs58831076
Chromosome Location	chr6:134453966-134453967
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr6:134453538-134454038	ECC-1	luminal epithelium:	n/a	n/a
2	MAFK	chr6:134453933-134454188	K562	blood:	n/a	chr6:134454075-134454086 chr6:134454070-134454086 chr6:134454070-134454085 chr6:134454065-134454085 chr6:134454075-134454086
3	MAFK	chr6:134453886-134454207	Hela-S3	cervix:	n/a	chr6:134454075-134454086 chr6:134454070-134454086 chr6:134454070-134454085 chr6:134454065-134454085 chr6:134454075-134454086
4	EP300	chr6:134453492-134454164	ECC-1	luminal epithelium:	n/a	n/a
5	MAFF	chr6:134453951-134454227	K562	blood:	n/a	chr6:134454013-134454027 chr6:134454014-134454032 chr6:134454069-134454087
6	MAFF	chr6:134453887-134454208	HepG2	liver:	n/a	chr6:134454013-134454027 chr6:134454014-134454032 chr6:134454069-134454087
7	MAFK	chr6:134453930-134454139	H1-hESC	embryonic stem cell:	n/a	chr6:134454075-134454086 chr6:134454070-134454086 chr6:134454070-134454085 chr6:134454065-134454085 chr6:134454075-134454086
8	MAFK	chr6:134453897-134454236	HepG2	liver:	n/a	chr6:134454075-134454086 chr6:134454070-134454086 chr6:134454070-134454085 chr6:134454065-134454085 chr6:134454075-134454086
9	TEAD4	chr6:134453525-134454143	ECC-1	luminal epithelium:	n/a	n/a
10	TEAD4	chr6:134453567-134454083	ECC-1	luminal epithelium:	n/a	n/a
11	SRF	chr6:134453539-134454123	ECC-1	luminal epithelium:	n/a	chr6:134453799-134453813
12	MAFK	chr6:134453887-134454237	IMR90	lung:	n/a	chr6:134454075-134454086 chr6:134454070-134454086 chr6:134454070-134454085 chr6:134454065-134454085 chr6:134454075-134454086
13	MAFK	chr6:134453871-134454260	HepG2	liver:	n/a	chr6:134454075-134454086 chr6:134454070-134454086 chr6:134454070-134454085 chr6:134454065-134454085 chr6:134454075-134454086
14	KAP1	chr6:134453835-134454204	U2OS	brain:	n/a	n/a
15	SRF	chr6:134453553-134453971	ECC-1	luminal epithelium:	n/a	chr6:134453799-134453813

Variant related genes	Relation type
RN7SL408P	TF binding region

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11961400	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962996	0.94[EUR][1000 genomes]
rs11963187	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964762	0.94[EUR][1000 genomes]
rs11968128	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968897	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968916	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11970500	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970523	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063374	0.94[EUR][1000 genomes]
rs17063379	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17063385	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063388	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063395	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429965	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429966	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55649880	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55756731	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55817816	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55861927	0.92[EUR][1000 genomes]
rs55953601	0.92[EUR][1000 genomes]
rs55978141	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56068977	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56096758	0.94[EUR][1000 genomes]
rs56104368	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56117836	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56163055	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196039	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56221261	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56280348	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56292241	0.92[EUR][1000 genomes]
rs56311826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56315103	0.92[EUR][1000 genomes]
rs56352446	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56393138	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56935348	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58451288	0.94[EUR][1000 genomes]
rs58486630	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59511756	0.94[EUR][1000 genomes]
rs59829206	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60289345	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60618660	0.92[EUR][1000 genomes]
rs60762745	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61211919	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556726	0.92[EUR][1000 genomes]
rs73556732	0.92[EUR][1000 genomes]
rs73556733	0.92[EUR][1000 genomes]
rs73556750	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556753	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556756	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73556759	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556761	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556763	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556765	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556771	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556773	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556781	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556782	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749701	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7767616	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134453600-134454000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:134453600-134454800	Enhancers	Fetal Intestine Large	intestine
3	chr6:134453800-134454200	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links