Variant report

Variant	rs73556726
Chromosome Location	chr6:134432577-134432578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:134431879..134432935-chr6:135143772..135144812,8	K562	blood:
2	chr6:134432309..134432838-chr6:134478041..134478686,2	K562	blood:
3	chr6:134432141..134433091-chr6:134444541..134445728,4	MCF-7	breast:
4	chr6:134431922..134432858-chr6:135203283..135204201,3	K562	blood:
5	chr6:134244863..134245803-chr6:134431933..134432844,2	K562	blood:
6	chr6:134385037..134385602-chr6:134432354..134432876,2	K562	blood:
7	chr6:134431948..134432838-chr6:135262089..135262667,2	K562	blood:
8	chr6:134431906..134432909-chr6:135261784..135262481,3	MCF-7	breast:
9	chr6:134431601..134432844-chr6:134444411..134445427,6	MCF-7	breast:
10	chr6:134430905..134433132-chr6:134494034..134496978,2	MCF-7	breast:
11	chr6:134293960..134294724-chr6:134431907..134432817,2	K562	blood:
12	chr6:134431893..134432854-chr6:135203300..135204212,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000118515	Chromatin interaction
ENSG00000240056	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11961400	0.92[EUR][1000 genomes]
rs11961417	0.92[EUR][1000 genomes]
rs11962996	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11963187	0.92[EUR][1000 genomes]
rs11964465	0.92[EUR][1000 genomes]
rs11964762	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11968128	0.92[EUR][1000 genomes]
rs11968888	0.92[EUR][1000 genomes]
rs11968897	0.92[EUR][1000 genomes]
rs11970500	0.92[EUR][1000 genomes]
rs11970523	0.92[EUR][1000 genomes]
rs17063374	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063379	0.92[EUR][1000 genomes]
rs17063385	0.92[EUR][1000 genomes]
rs17063388	0.92[EUR][1000 genomes]
rs17063395	0.92[EUR][1000 genomes]
rs4429965	0.92[EUR][1000 genomes]
rs4429966	0.92[EUR][1000 genomes]
rs55649880	0.92[EUR][1000 genomes]
rs55756731	0.92[EUR][1000 genomes]
rs55817816	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55861927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55953601	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55978141	0.92[EUR][1000 genomes]
rs56068977	0.92[EUR][1000 genomes]
rs56096758	0.98[EUR][1000 genomes]
rs56104368	0.92[EUR][1000 genomes]
rs56117836	0.92[EUR][1000 genomes]
rs56163055	0.92[EUR][1000 genomes]
rs56196039	0.92[EUR][1000 genomes]
rs56221261	0.92[EUR][1000 genomes]
rs56280348	0.84[EUR][1000 genomes]
rs56292241	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311826	0.92[EUR][1000 genomes]
rs56315103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56352446	0.89[EUR][1000 genomes]
rs56393138	0.92[EUR][1000 genomes]
rs56935348	0.92[EUR][1000 genomes]
rs58451288	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58486630	0.92[EUR][1000 genomes]
rs58831076	0.92[EUR][1000 genomes]
rs59511756	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs59829206	0.92[EUR][1000 genomes]
rs60289345	0.92[EUR][1000 genomes]
rs60618660	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60762745	0.92[EUR][1000 genomes]
rs61211919	0.84[EUR][1000 genomes]
rs73556732	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556733	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556750	0.90[EUR][1000 genomes]
rs73556753	0.90[EUR][1000 genomes]
rs73556756	0.89[EUR][1000 genomes]
rs73556759	0.94[EUR][1000 genomes]
rs73556761	0.94[EUR][1000 genomes]
rs73556763	0.94[EUR][1000 genomes]
rs73556765	0.94[EUR][1000 genomes]
rs73556771	0.92[EUR][1000 genomes]
rs73556773	0.92[EUR][1000 genomes]
rs73556781	0.92[EUR][1000 genomes]
rs73556782	0.92[EUR][1000 genomes]
rs73556797	0.92[EUR][1000 genomes]
rs73558605	0.92[EUR][1000 genomes]
rs73558613	0.92[EUR][1000 genomes]
rs73558620	0.92[EUR][1000 genomes]
rs73558622	0.92[EUR][1000 genomes]
rs73558625	0.90[EUR][1000 genomes]
rs73558626	0.90[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134416200-134438600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:134431400-134433600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:134431400-134438000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:134431400-134438600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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