Variant report

Variant	rs11961417
Chromosome Location	chr6:134445303-134445304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:134431601..134432844-chr6:134444411..134445427,6	MCF-7	breast:
2	chr6:134432141..134433091-chr6:134444541..134445728,4	MCF-7	breast:
3	chr6:134444912..134445727-chr6:134961799..134962512,2	K562	blood:
4	chr6:134434287..134435015-chr6:134444688..134445342,2	K562	blood:
5	chr6:134431938..134432543-chr6:134444825..134445504,2	K562	blood:
6	chr6:134444753..134445389-chr6:135143783..135144712,4	K562	blood:
7	chr6:134444444..134445402-chr6:135202826..135204113,4	K562	blood:
8	chr6:134418108..134418847-chr6:134444651..134445572,2	MCF-7	breast:
9	chr6:134244798..134245478-chr6:134445034..134445729,2	MCF-7	breast:
10	chr5:72867625..72868146-chr6:134444783..134445688,5	MCF-7	breast:

No data

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11961400	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962996	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs11963187	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964762	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11968128	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968897	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968916	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11970500	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970523	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063374	0.94[EUR][1000 genomes]
rs17063379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17063385	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063388	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063395	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55649880	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55756731	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55817816	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55861927	0.92[EUR][1000 genomes]
rs55953601	0.92[EUR][1000 genomes]
rs55978141	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56068977	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56096758	0.94[EUR][1000 genomes]
rs56104368	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56117836	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56163055	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196039	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56221261	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56280348	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56292241	0.92[EUR][1000 genomes]
rs56311826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56315103	0.92[EUR][1000 genomes]
rs56352446	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56393138	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56935348	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58451288	0.94[EUR][1000 genomes]
rs58486630	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58831076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59511756	0.94[EUR][1000 genomes]
rs59829206	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60289345	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60618660	0.92[EUR][1000 genomes]
rs60762745	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61211919	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556726	0.92[EUR][1000 genomes]
rs73556732	0.92[EUR][1000 genomes]
rs73556733	0.92[EUR][1000 genomes]
rs73556750	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556753	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556756	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73556759	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556761	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556763	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556765	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73556771	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556773	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73556781	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556782	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73556797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749701	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7767616	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134439000-134453600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:134443800-134445400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:134445000-134445400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:134445000-134445400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:134445000-134445400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:134445000-134445400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:134445000-134445400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:134445000-134445400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:134445000-134445400	Enhancers	Liver	Liver
10	chr6:134445000-134445400	Enhancers	Brain Anterior Caudate	brain
11	chr6:134445000-134445400	Enhancers	Fetal Intestine Large	intestine
12	chr6:134445000-134445400	Enhancers	Fetal Kidney	kidney
13	chr6:134445000-134445400	Active TSS	A549	lung
14	chr6:134445000-134445400	Enhancers	NHDF-Ad	bronchial
15	chr6:134445000-134445600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:134445000-134445600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:134445000-134445600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:134445000-134445600	Enhancers	Fetal Intestine Small	intestine
19	chr6:134445200-134445400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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