Variant report

Variant	rs6036381
Chromosome Location	chr20:23316501-23316502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23312686..23317926-chr20:23318628..23321292,6	K562	blood:
2	chr20:23311621..23313833-chr20:23315735..23318823,3	MCF-7	breast:
3	chr20:23315045..23317329-chr20:23318645..23320307,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11908625	0.85[JPT][hapmap]
rs2153986	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2281433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap]
rs56917308	0.91[ASN][1000 genomes]
rs60130293	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6036387	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs6036388	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6036393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs6036394	0.84[ASN][1000 genomes]
rs6036395	0.84[ASN][1000 genomes]
rs6036400	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6036402	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6048721	0.89[ASN][1000 genomes]
rs6048724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6048726	0.92[ASW][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.91[ASN][1000 genomes]
rs6048727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6048747	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6048748	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs6048749	0.84[ASN][1000 genomes]
rs6048751	0.84[ASN][1000 genomes]
rs6048764	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6048773	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6048780	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6048787	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6076052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6076060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs6076061	0.84[ASN][1000 genomes]
rs6076069	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.90[TSI][hapmap]
rs6083079	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6083082	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs6083091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6083117	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6083125	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap]
rs6106650	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6114053	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.94[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6114086	0.82[TSI][hapmap]
rs73319497	0.84[ASN][1000 genomes]
rs7351246	0.82[TSI][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23312400-23317600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23313400-23317200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr20:23314600-23316600	Enhancers	GM12878-XiMat	blood
4	chr20:23315600-23321000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr20:23316200-23317600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:23316400-23320600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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