Variant report

Variant	rs6048726
Chromosome Location	chr20:23313032-23313033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23311621..23313833-chr20:23315735..23318823,3	MCF-7	breast:
2	chr20:23311600..23313681-chr20:23341000..23343675,2	K562	blood:
3	chr20:23312686..23317926-chr20:23318628..23321292,6	K562	blood:

Variant related genes	Relation type
ENSG00000125812	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11908625	0.85[JPT][hapmap]
rs2153986	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2281433	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs56917308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60130293	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036381	0.91[ASN][1000 genomes]
rs6036382	0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6036387	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036388	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036393	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036394	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036395	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036396	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036400	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6036402	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs6048721	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6048724	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048727	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048747	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6048748	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048749	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048751	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048764	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048773	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048780	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6048782	0.84[EUR][1000 genomes]
rs6048783	0.84[EUR][1000 genomes]
rs6048785	0.84[EUR][1000 genomes]
rs6048787	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6048789	0.84[EUR][1000 genomes]
rs6076052	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076060	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6076061	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6076069	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs6083079	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083082	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083091	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083109	0.84[EUR][1000 genomes]
rs6083117	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6083120	0.84[EUR][1000 genomes]
rs6083125	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6106650	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6114053	0.92[ASW][hapmap];0.82[CHB][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114086	0.81[TSI][hapmap]
rs73303309	0.89[EUR][1000 genomes]
rs73319497	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7351246	0.81[TSI][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23307800-23314800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:23311800-23315000	Enhancers	K562	blood
3	chr20:23312200-23313200	Enhancers	HUVEC	blood vessel
4	chr20:23312400-23313400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr20:23312400-23313400	Enhancers	GM12878-XiMat	blood
6	chr20:23312400-23317600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:23312600-23313400	Enhancers	Primary B cells from peripheral blood	blood
8	chr20:23312600-23316000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:23312800-23313200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr20:23313000-23313400	Enhancers	NHEK	skin

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