Variant report

Variant	rs2153986
Chromosome Location	chr20:23322328-23322329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23321273..23323325-chr20:23328933..23330875,2	K562	blood:
2	chr20:23308765..23311437-chr20:23321405..23324295,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11908625	0.85[JPT][hapmap]
rs1203994	0.80[ASN][1000 genomes]
rs2281433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56917308	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60130293	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6036381	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6036382	0.81[ASN][1000 genomes]
rs6036387	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6036388	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6036393	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6036394	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6036395	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6036396	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6036400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6036402	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6048721	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048726	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048747	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6048748	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6048749	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6048751	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6048764	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6048773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs6048780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6048782	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048783	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048785	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6048787	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048789	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048791	0.83[ASN][1000 genomes]
rs6048792	0.83[ASN][1000 genomes]
rs6048793	0.83[ASN][1000 genomes]
rs6076052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6076060	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6076061	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6076069	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6083079	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6083082	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6083091	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6083109	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6083117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6083120	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6083125	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6106650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6106652	0.81[ASN][1000 genomes]
rs6114053	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6114078	0.83[ASN][1000 genomes]
rs6114086	0.81[ASN][1000 genomes]
rs73303309	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73319497	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23319600-23324600	Weak transcription	Fetal Heart	heart
2	chr20:23321600-23322600	Enhancers	GM12878-XiMat	blood
3	chr20:23321800-23329400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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