Variant report

Variant	rs73303309
Chromosome Location	chr20:23364784-23364785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23342196..23344272-chr20:23364750..23367230,3	MCF-7	breast:
2	chr20:23358168..23360922-chr20:23363118..23365807,2	K562	blood:

Variant related genes	Relation type
ENSG00000125812	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11908625	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1203994	0.96[ASN][1000 genomes]
rs2153986	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2281433	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56917308	0.89[EUR][1000 genomes]
rs60130293	0.89[EUR][1000 genomes]
rs6036387	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036388	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036393	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036394	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036395	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036396	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036400	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6036402	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6048721	0.89[EUR][1000 genomes]
rs6048724	0.89[EUR][1000 genomes]
rs6048726	0.89[EUR][1000 genomes]
rs6048727	0.89[EUR][1000 genomes]
rs6048748	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048749	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048751	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048764	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048773	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6048780	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6048782	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048783	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048785	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6048787	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048789	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048791	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048792	0.92[ASN][1000 genomes]
rs6048793	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048794	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6076052	0.89[EUR][1000 genomes]
rs6076060	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6076061	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6076069	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083079	0.89[EUR][1000 genomes]
rs6083082	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083091	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083109	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083117	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083120	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083125	0.89[ASN][1000 genomes]
rs6106650	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6106652	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6114053	0.89[EUR][1000 genomes]
rs6114078	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6114086	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73319497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7361799	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8119387	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23344000-23392600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:23348000-23374200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr20:23348200-23384800	Weak transcription	Stomach Mucosa	stomach
4	chr20:23348800-23366400	Strong transcription	Dnd41	blood
5	chr20:23349600-23366000	Strong transcription	HepG2	liver
6	chr20:23351200-23371000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:23351200-23374000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr20:23351400-23374000	Weak transcription	Fetal Brain Male	brain
9	chr20:23352200-23367800	Weak transcription	Small Intestine	intestine
10	chr20:23352800-23376400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr20:23353000-23365400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr20:23353000-23378200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr20:23353400-23372400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr20:23353400-23374200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr20:23354400-23389000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr20:23354400-23399800	Weak transcription	Hela-S3	cervix
17	chr20:23354600-23374200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr20:23354600-23375200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr20:23354800-23371000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr20:23354800-23373600	Weak transcription	Colonic Mucosa	Colon
21	chr20:23356600-23365400	Weak transcription	Gastric	stomach
22	chr20:23356600-23374200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr20:23356800-23368800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr20:23357000-23371200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr20:23357800-23370000	Weak transcription	Brain Substantia Nigra	brain
26	chr20:23358000-23366800	Weak transcription	K562	blood
27	chr20:23358000-23371200	Weak transcription	Esophagus	oesophagus
28	chr20:23358000-23371200	Weak transcription	NHEK	skin
29	chr20:23358000-23373600	Weak transcription	Right Ventricle	heart
30	chr20:23358000-23374400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr20:23358200-23367800	Weak transcription	NH-A	brain
32	chr20:23358200-23368600	Weak transcription	Fetal Kidney	kidney
33	chr20:23358200-23370600	Weak transcription	Pancreas	Pancrea
34	chr20:23358200-23373600	Weak transcription	Brain Angular Gyrus	brain
35	chr20:23358200-23377800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr20:23358400-23364800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr20:23358400-23370600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr20:23358600-23367000	Weak transcription	Brain Hippocampus Middle	brain
39	chr20:23358600-23367400	Weak transcription	HSMM	muscle
40	chr20:23358600-23372400	Weak transcription	HMEC	breast
41	chr20:23358800-23370200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr20:23359000-23371200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr20:23359600-23366200	Strong transcription	Fetal Intestine Large	intestine
44	chr20:23360000-23365200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr20:23360000-23365600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr20:23360200-23373600	Weak transcription	NHLF	lung
47	chr20:23360400-23371000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr20:23360600-23365800	Strong transcription	Fetal Intestine Small	intestine
49	chr20:23360800-23370600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr20:23361000-23368600	Weak transcription	NHDF-Ad	bronchial

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