Variant report

Variant	rs60130293
Chromosome Location	chr20:23313987-23313988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23312686..23317926-chr20:23318628..23321292,6	K562	blood:
2	chr20:23313103..23316389-chr20:23330465..23332586,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234832	Chromatin interaction
ENSG00000132661	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs2153986	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2281433	0.84[EUR][1000 genomes]
rs56917308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036381	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6036382	0.86[ASN][1000 genomes]
rs6036387	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036388	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036393	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036394	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036395	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036396	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036400	0.84[EUR][1000 genomes]
rs6036402	0.84[EUR][1000 genomes]
rs6048721	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6048724	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048727	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048748	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048749	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048751	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048764	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048773	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048780	0.84[EUR][1000 genomes]
rs6048782	0.84[EUR][1000 genomes]
rs6048783	0.84[EUR][1000 genomes]
rs6048785	0.84[EUR][1000 genomes]
rs6048787	0.84[EUR][1000 genomes]
rs6048789	0.84[EUR][1000 genomes]
rs6076052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076060	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6076061	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6076069	0.84[EUR][1000 genomes]
rs6083079	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083082	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083091	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083109	0.84[EUR][1000 genomes]
rs6083117	0.84[EUR][1000 genomes]
rs6083120	0.84[EUR][1000 genomes]
rs6106650	0.84[EUR][1000 genomes]
rs6114053	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73303309	0.89[EUR][1000 genomes]
rs73319497	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23307800-23314800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:23311800-23315000	Enhancers	K562	blood
3	chr20:23312400-23317600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:23312600-23316000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr20:23313400-23314600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr20:23313400-23314600	Weak transcription	GM12878-XiMat	blood
7	chr20:23313400-23317200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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