Variant report

Variant	rs6048751
Chromosome Location	chr20:23334213-23334214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23332367..23335198-chr20:23611839..23614673,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270001	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1203994	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2153986	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2281433	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56917308	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60130293	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036381	0.84[ASN][1000 genomes]
rs6036387	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036388	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036393	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036395	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036396	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036400	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6036402	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048721	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6048724	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048726	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048727	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048748	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048749	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048764	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048773	0.89[EUR][1000 genomes]
rs6048780	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6048782	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048783	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048785	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6048787	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048789	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048791	0.85[ASN][1000 genomes]
rs6048792	0.85[ASN][1000 genomes]
rs6048793	0.85[ASN][1000 genomes]
rs6076052	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6076060	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076061	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076069	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083079	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083082	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083091	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083109	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083117	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083120	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083125	0.81[ASN][1000 genomes]
rs6106650	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6106652	0.83[ASN][1000 genomes]
rs6114053	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6114078	0.85[ASN][1000 genomes]
rs6114086	0.83[ASN][1000 genomes]
rs73303309	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73319497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7361799	0.81[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23332200-23334600	Weak transcription	Aorta	Aorta
2	chr20:23332400-23334600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:23332400-23334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:23332400-23334600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:23332400-23334600	Weak transcription	Lung	lung
6	chr20:23332400-23336600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:23332400-23336800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr20:23332600-23334400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr20:23332600-23334400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr20:23332600-23334400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr20:23332600-23334600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr20:23332600-23334600	Weak transcription	Colonic Mucosa	Colon
13	chr20:23332600-23334600	Weak transcription	Gastric	stomach
14	chr20:23332600-23334600	Weak transcription	Ovary	ovary
15	chr20:23332600-23336600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr20:23332600-23337600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr20:23332800-23334400	Genic enhancers	Primary T cells from cord blood	blood
18	chr20:23332800-23334800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr20:23332800-23334800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr20:23332800-23336200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr20:23333000-23334400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr20:23333000-23334400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr20:23333000-23334400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr20:23333000-23334400	Weak transcription	Fetal Kidney	kidney
25	chr20:23333000-23334400	Weak transcription	Placenta	Placenta
26	chr20:23333000-23334600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr20:23333000-23334600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr20:23333000-23334600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr20:23333000-23334600	Weak transcription	Brain Anterior Caudate	brain
30	chr20:23333000-23334600	Weak transcription	HSMMtube	muscle
31	chr20:23333000-23334600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr20:23333000-23334600	Weak transcription	NHDF-Ad	bronchial
33	chr20:23333000-23334600	Weak transcription	Osteobl	bone
34	chr20:23333000-23334800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr20:23333000-23334800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr20:23333000-23334800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr20:23333000-23334800	Weak transcription	Pancreas	Pancrea
38	chr20:23333000-23334800	Weak transcription	Right Ventricle	heart
39	chr20:23333000-23335000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr20:23333000-23336800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr20:23333000-23337800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr20:23333000-23338000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr20:23333000-23338000	Weak transcription	Fetal Brain Male	brain
44	chr20:23333000-23338200	Weak transcription	Brain Angular Gyrus	brain
45	chr20:23333200-23334400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr20:23333200-23334600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr20:23333200-23334600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr20:23333200-23334600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr20:23333200-23334600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr20:23333200-23334600	Weak transcription	Liver	Liver

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