Variant report

Variant	rs6036388
Chromosome Location	chr20:23329022-23329023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23187473..23190139-chr20:23328538..23331366,2	MCF-7	breast:
2	chr20:23328647..23330996-chr20:23399236..23401652,2	K562	blood:
3	chr20:23321273..23323325-chr20:23328933..23330875,2	K562	blood:
4	chr20:23022684..23024263-chr20:23328966..23331361,2	MCF-7	breast:
5	chr20:23112159..23115128-chr20:23328465..23330957,2	K562	blood:

Variant related genes	Relation type
ENSG00000233746	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1203994	0.82[ASN][1000 genomes]
rs2153986	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2281433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56917308	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60130293	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036381	0.84[ASN][1000 genomes]
rs6036387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036395	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036396	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6036402	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048721	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6048724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048726	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048727	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs6048748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048749	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048751	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048764	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs6048780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6048782	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048783	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048785	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6048787	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048789	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048791	0.85[ASN][1000 genomes]
rs6048792	0.85[ASN][1000 genomes]
rs6048793	0.85[ASN][1000 genomes]
rs6076052	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6076060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076061	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076069	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083079	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083109	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083120	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083125	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6106650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6106652	0.83[ASN][1000 genomes]
rs6114053	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6114078	0.85[ASN][1000 genomes]
rs6114086	0.83[ASN][1000 genomes]
rs73303309	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73319497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7361799	0.81[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23321800-23329400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:23325600-23329600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr20:23326000-23329800	Weak transcription	Fetal Heart	heart
4	chr20:23326200-23329400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr20:23326200-23330000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr20:23327000-23330400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:23327000-23330800	Weak transcription	Spleen	Spleen
8	chr20:23327200-23330000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr20:23327400-23330000	Weak transcription	HSMM	muscle
10	chr20:23327600-23330000	Weak transcription	Pancreas	Pancrea
11	chr20:23328000-23330000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr20:23328200-23329400	Weak transcription	Fetal Muscle Leg	muscle
13	chr20:23328200-23330000	Weak transcription	Adipose Nuclei	Adipose
14	chr20:23328400-23329400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr20:23328400-23329400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr20:23328600-23329600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr20:23328600-23330000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr20:23328800-23329400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr20:23328800-23329600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr20:23328800-23330000	Weak transcription	Fetal Kidney	kidney
21	chr20:23329000-23329600	Enhancers	HepG2	liver
22	chr20:23329000-23329800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr20:23329000-23330000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr20:23329000-23330000	Enhancers	H9 Cell Line	embryonic stem cell
25	chr20:23329000-23330000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr20:23329000-23330000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr20:23329000-23330000	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr20:23329000-23330200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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