The 2.0 version of rSNPBase

Variant report

Variant rs6048789
Chromosome Location chr20:23392491-23392492
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:23344000-23392600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr20:23354400-23399800 Weak transcription Hela-S3 cervix
3 chr20:23361200-23399600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr20:23372800-23400800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr20:23375600-23396800 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr20:23375600-23400000 Weak transcription Rectal Smooth Muscle rectum
7 chr20:23375800-23396200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr20:23375800-23400000 Weak transcription H9 Cell Line embryonic stem cell
9 chr20:23375800-23400200 Weak transcription Fetal Brain Male brain
10 chr20:23376600-23400400 Weak transcription Fetal Muscle Trunk muscle
11 chr20:23377000-23398400 Weak transcription Primary hematopoietic stem cells blood
12 chr20:23378200-23400000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr20:23378400-23399800 Weak transcription iPS-20b Cell Line embryonic stem cell
14 chr20:23378800-23396400 Weak transcription Brain Cingulate Gyrus brain
15 chr20:23378800-23399800 Weak transcription Brain Inferior Temporal Lobe brain
16 chr20:23379000-23400000 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr20:23379000-23400200 Weak transcription Primary B cells from cord blood blood
18 chr20:23379000-23400400 Weak transcription Brain Substantia Nigra brain
19 chr20:23379200-23392600 Weak transcription Muscle Satellite Cultured Cells --
20 chr20:23379200-23400000 Weak transcription HUVEC blood vessel
21 chr20:23379200-23400200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr20:23380800-23400000 Weak transcription NH-A brain
23 chr20:23382000-23400200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr20:23382200-23398400 Weak transcription Fetal Brain Female brain
25 chr20:23382200-23400200 Weak transcription A549 lung
26 chr20:23382400-23392800 Weak transcription Pancreas Pancrea
27 chr20:23382400-23397400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr20:23383000-23398000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr20:23383000-23399800 Weak transcription Fetal Intestine Small intestine
30 chr20:23383000-23400400 Weak transcription Thymus Thymus
31 chr20:23383200-23400000 Weak transcription Primary monocytes fromperipheralblood blood
32 chr20:23383600-23392600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr20:23383600-23395800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr20:23383600-23396000 Weak transcription Primary T cells fromperipheralblood blood
35 chr20:23383600-23396400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr20:23383600-23400000 Weak transcription Monocytes-CD14+_RO01746 blood
37 chr20:23383600-23400400 Weak transcription Fetal Thymus thymus
38 chr20:23383800-23398600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr20:23385200-23394600 Weak transcription Fetal Stomach stomach
40 chr20:23385200-23400400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr20:23385400-23392600 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr20:23385400-23392600 Weak transcription Gastric stomach
43 chr20:23385400-23399000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr20:23385400-23400400 Weak transcription Aorta Aorta
45 chr20:23385600-23396200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr20:23385600-23396400 Weak transcription NHEK skin
47 chr20:23385600-23396600 Weak transcription HMEC breast
48 chr20:23385600-23398200 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr20:23385800-23396400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr20:23387000-23400400 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015