Variant report

Variant	rs2281433
Chromosome Location	chr20:23378459-23378460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23377748..23380107-chr20:23380413..23383027,2	MCF-7	breast:
2	chr20:23365990..23367879-chr20:23377363..23380103,2	MCF-7	breast:
3	chr20:23336291..23339016-chr20:23377494..23379977,2	K562	blood:

Variant related genes	Relation type
ENSG00000232645	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11908625	0.93[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1203994	0.89[ASN][1000 genomes]
rs2153986	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56917308	0.84[EUR][1000 genomes]
rs60130293	0.84[EUR][1000 genomes]
rs6036387	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036388	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036393	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036394	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036395	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036396	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036400	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6036402	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6048721	0.84[EUR][1000 genomes]
rs6048724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6048726	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs6048727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6048747	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6048748	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048749	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048751	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048764	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6048773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048780	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048782	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048785	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048787	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048789	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048791	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048792	1.00[ASN][1000 genomes]
rs6048793	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048794	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6076052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6076060	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6076061	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6076069	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083079	0.84[EUR][1000 genomes]
rs6083082	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6083109	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083125	0.87[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6106650	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106652	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6114053	1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs6114078	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114086	0.93[CHD][hapmap];1.00[LWK][hapmap];0.91[TSI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73303309	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73319497	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7361799	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8119387	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23344000-23392600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:23348200-23384800	Weak transcription	Stomach Mucosa	stomach
3	chr20:23354400-23389000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr20:23354400-23399800	Weak transcription	Hela-S3	cervix
5	chr20:23361200-23399600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr20:23366800-23382400	Strong transcription	Dnd41	blood
7	chr20:23367800-23380400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr20:23372400-23378600	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr20:23372800-23400800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr20:23374000-23379000	Strong transcription	Primary B cells from cord blood	blood
11	chr20:23375000-23380200	Weak transcription	GM12878-XiMat	blood
12	chr20:23375000-23389800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr20:23375200-23380200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr20:23375200-23381600	Weak transcription	Fetal Intestine Small	intestine
15	chr20:23375400-23381200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr20:23375600-23378600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr20:23375600-23381600	Weak transcription	Fetal Thymus	thymus
18	chr20:23375600-23381800	Weak transcription	Gastric	stomach
19	chr20:23375600-23384400	Weak transcription	Fetal Lung	lung
20	chr20:23375600-23384600	Weak transcription	Brain Germinal Matrix	brain
21	chr20:23375600-23390600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr20:23375600-23396800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr20:23375600-23400000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr20:23375800-23378600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr20:23375800-23379000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr20:23375800-23381600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr20:23375800-23382800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr20:23375800-23383800	Weak transcription	Colonic Mucosa	Colon
29	chr20:23375800-23384600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr20:23375800-23384600	Weak transcription	HMEC	breast
31	chr20:23375800-23385000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr20:23375800-23386800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr20:23375800-23387600	Weak transcription	K562	blood
34	chr20:23375800-23388200	Weak transcription	Small Intestine	intestine
35	chr20:23375800-23388600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr20:23375800-23396200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr20:23375800-23400000	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr20:23375800-23400200	Weak transcription	Fetal Brain Male	brain
39	chr20:23376000-23380000	Weak transcription	Lung	lung
40	chr20:23376000-23380000	Weak transcription	Thymus	Thymus
41	chr20:23376000-23380200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr20:23376000-23380200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr20:23376000-23380200	Weak transcription	HSMMtube	muscle
44	chr20:23376000-23380600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr20:23376000-23381200	Weak transcription	Fetal Brain Female	brain
46	chr20:23376000-23381400	Weak transcription	Primary B cells from peripheral blood	blood
47	chr20:23376000-23381600	Weak transcription	Pancreas	Pancrea
48	chr20:23376000-23381800	Weak transcription	Fetal Muscle Leg	muscle
49	chr20:23376000-23381800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr20:23376000-23381800	Weak transcription	Spleen	Spleen

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