Variant report

Variant	rs6114053
Chromosome Location	chr20:23315371-23315372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23312686..23317926-chr20:23318628..23321292,6	K562	blood:
2	chr20:23315045..23317329-chr20:23318645..23320307,2	MCF-7	breast:
3	chr20:23313103..23316389-chr20:23330465..23332586,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132661	Chromatin interaction
ENSG00000234832	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs2153986	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2281433	1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs56917308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60130293	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036381	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6036382	0.86[ASN][1000 genomes]
rs6036387	1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036388	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036393	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036394	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036395	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6036396	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036400	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs6036402	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs6048721	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6048724	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048726	0.92[ASW][hapmap];0.82[CHB][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048727	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048747	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6048748	1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048749	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048751	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048764	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048773	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048780	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs6048782	0.84[EUR][1000 genomes]
rs6048783	0.84[EUR][1000 genomes]
rs6048785	0.84[EUR][1000 genomes]
rs6048787	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs6048789	0.84[EUR][1000 genomes]
rs6076052	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076060	1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6076061	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6076069	1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs6083079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083082	1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083091	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6083109	0.84[EUR][1000 genomes]
rs6083117	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs6083120	0.84[EUR][1000 genomes]
rs6083125	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6106650	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs6114086	0.82[TSI][hapmap]
rs73303309	0.89[EUR][1000 genomes]
rs73319497	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7351246	0.82[TSI][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23312400-23317600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23312600-23316000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:23313400-23317200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr20:23314600-23316200	Enhancers	Left Ventricle	heart
5	chr20:23314600-23316600	Enhancers	GM12878-XiMat	blood
6	chr20:23314800-23315600	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr20:23315000-23315600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr20:23315000-23315800	Enhancers	Psoas Muscle	Psoas
9	chr20:23315200-23316400	Weak transcription	Fetal Heart	heart

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