Variant report

Variant rs62256903
Chromosome Location chr3:52573844-52573845
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52571400-52594200 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr3:52571800-52574200 Enhancers Primary T cells fromperipheralblood blood
3 chr3:52572000-52574000 Enhancers Primary monocytes fromperipheralblood blood
4 chr3:52572200-52574200 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr3:52572200-52574400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
6 chr3:52572200-52574600 Enhancers Primary T helper naive cells from peripheral blood blood
7 chr3:52572200-52575200 Weak transcription Fetal Kidney kidney
8 chr3:52572200-52581000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr3:52572200-52584400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr3:52572400-52574200 Enhancers Primary T helper 17 cells PMA-I stimulated --
11 chr3:52572400-52574200 Enhancers Brain Cingulate Gyrus brain
12 chr3:52572400-52574200 Enhancers Right Atrium heart
13 chr3:52572400-52574200 Enhancers Skeletal Muscle Female skeletal muscle
14 chr3:52572400-52574400 Enhancers Adipose Nuclei Adipose
15 chr3:52572400-52578800 Weak transcription A549 lung
16 chr3:52572400-52580600 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr3:52572400-52581800 Weak transcription Placenta Amnion Placenta Amnion
18 chr3:52572400-52594200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr3:52572400-52633000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr3:52572600-52574600 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr3:52572800-52574200 Genic enhancers Fetal Adrenal Gland Adrenal Gland
22 chr3:52573000-52574200 Weak transcription H1 Cell Line embryonic stem cell
23 chr3:52573000-52574200 Enhancers Spleen Spleen
24 chr3:52573000-52574800 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr3:52573000-52574800 Genic enhancers GM12878-XiMat blood
26 chr3:52573000-52575000 Weak transcription iPS-15b Cell Line embryonic stem cell
27 chr3:52573000-52575400 Weak transcription Rectal Smooth Muscle rectum
28 chr3:52573200-52574200 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr3:52573200-52574200 Genic enhancers Liver Liver
30 chr3:52573200-52574200 Strong transcription Fetal Intestine Small intestine
31 chr3:52573200-52574200 Strong transcription Fetal Stomach stomach
32 chr3:52573200-52574400 Weak transcription Brain Substantia Nigra brain
33 chr3:52573200-52575000 Weak transcription Brain Angular Gyrus brain
34 chr3:52573200-52575000 Weak transcription Fetal Intestine Large intestine
35 chr3:52573200-52575600 Weak transcription Fetal Lung lung
36 chr3:52573200-52576200 Strong transcription HUES6 Cell Line embryonic stem cell
37 chr3:52573200-52576400 Strong transcription Fetal Muscle Trunk muscle
38 chr3:52573200-52576600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr3:52573200-52578600 Weak transcription Brain Germinal Matrix brain
40 chr3:52573200-52579000 Weak transcription Thymus Thymus
41 chr3:52573200-52582000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr3:52573200-52583400 Weak transcription H9 Cell Line embryonic stem cell
43 chr3:52573200-52585000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr3:52573200-52586400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr3:52573200-52589600 Strong transcription iPS-20b Cell Line embryonic stem cell
46 chr3:52573200-52590400 Weak transcription ES-I3 Cell Line embryonic stem cell
47 chr3:52573400-52574200 Genic enhancers Breast Myoepithelial Primary Cells Breast
48 chr3:52573400-52574200 Genic enhancers Muscle Satellite Cultured Cells --
49 chr3:52573400-52574200 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
50 chr3:52573400-52574200 Genic enhancers Left Ventricle heart

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