Variant report

Variant	rs3774366
Chromosome Location	chr3:52641255-52641256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:52635882..52639721-chr3:52640182..52642371,3	K562	blood:
2	chr3:52638221..52639906-chr3:52640595..52642416,2	K562	blood:
3	chr3:52569398..52572124-chr3:52639964..52643455,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168273	Chromatin interaction

Extended variants
information (count: 284 )
Associated
traits (count: 20 )

rSNPs within LD-proxies of this variant (count:283)

rs_ID	r²[population]
rs1010552	0.84[CHB][hapmap]
rs1010553	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs1010554	0.91[CHB][hapmap];0.84[CHD][hapmap]
rs1014969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs1029871	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1042779	0.83[CHB][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap]
rs10433615	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10510760	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1075653	0.80[GIH][hapmap];0.86[JPT][hapmap];0.84[MKK][hapmap]
rs1076425	0.80[GIH][hapmap];0.86[JPT][hapmap]
rs10780035	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10865973	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10865974	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10933	0.83[ASN][1000 genomes]
rs1108842	1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap]
rs11130307	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130308	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11130310	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130311	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11130313	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11130314	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130315	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130317	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130318	0.81[EUR][1000 genomes]
rs11130319	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130321	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130323	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11130325	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130326	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11130327	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11177	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11235	0.95[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1133415	0.91[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.83[ASN][1000 genomes]
rs11708075	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11709448	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11711421	0.95[JPT][hapmap]
rs11714030	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11714088	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11714419	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11714565	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11716747	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11717043	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717836	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11718420	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11718509	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11719514	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11720159	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11720243	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11720432	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12486554	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12486847	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12487445	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12487591	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12488461	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12488527	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12489732	0.81[ASN][1000 genomes]
rs12489828	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12493107	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12496476	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12496634	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12497998	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12498066	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12629699	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12629701	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12632265	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12632381	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12635140	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13059862	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13060048	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13060675	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13061253	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13061423	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13063160	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13064064	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065019	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13065851	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13068293	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13069481	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13071584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13074853	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13076193	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13076398	0.83[ASN][1000 genomes]
rs13078422	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13079063	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13081028	0.86[CHB][hapmap];0.86[CHD][hapmap];0.81[LWK][hapmap]
rs13081031	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13081155	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13082208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13082960	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13083798	1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13085331	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13085775	0.94[ASW][hapmap];0.84[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13085895	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13086297	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13086898	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13087772	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13095332	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13098776	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13303	0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs13621	0.81[ASN][1000 genomes]
rs1468638	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1561337	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17052256	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17052259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17264436	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1821879	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1866268	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1961958	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.81[ASN][1000 genomes]
rs1961959	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2019065	0.82[ASW][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs2028216	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2071506	0.80[GIH][hapmap];0.86[JPT][hapmap];0.84[MKK][hapmap]
rs2071507	0.91[JPT][hapmap]
rs2071508	0.80[GIH][hapmap];0.86[JPT][hapmap]
rs2072390	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2079929	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2083180	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2109634	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2118540	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2159644	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2164884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2164885	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2230534	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2230535	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2239549	0.86[JPT][hapmap];0.82[TSI][hapmap]
rs2239551	0.86[JPT][hapmap];0.82[TSI][hapmap]
rs2239699	0.84[JPT][hapmap]
rs2240919	0.86[JPT][hapmap]
rs2240920	0.91[JPT][hapmap];0.83[MEX][hapmap]
rs2251219	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.85[ASN][1000 genomes]
rs2268023	0.86[JPT][hapmap]
rs2268024	0.81[EUR][1000 genomes]
rs2268025	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2268026	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2268027	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2270197	0.86[JPT][hapmap]
rs2276824	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs2286798	0.80[GIH][hapmap];0.91[JPT][hapmap];0.81[TSI][hapmap]
rs2286800	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2289247	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2289249	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2289250	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2300149	0.80[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap]
rs2336145	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2336146	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2336148	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2336149	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2336542	0.95[CEU][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2336545	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2535629	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2577831	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.92[ASN][1000 genomes]
rs2590838	1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.91[ASN][1000 genomes]
rs2590846	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2878628	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2878726	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33964154	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33967311	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34005367	0.81[ASN][1000 genomes]
rs34017441	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34115864	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34157897	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34168767	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34173654	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34215106	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34291015	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34341238	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34537256	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34610142	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34610878	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34739010	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34754793	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34757451	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34918356	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34954168	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35107891	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35211965	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35212380	0.85[ASN][1000 genomes]
rs35249778	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35315313	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35409678	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35526119	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35976524	0.97[ASN][1000 genomes]
rs3617	0.82[CHB][hapmap]
rs3733039	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3733041	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3733045	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755798	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3755806	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774349	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3774354	0.86[JPT][hapmap];0.81[TSI][hapmap]
rs3774355	0.81[JPT][hapmap]
rs3774365	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796353	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3852066	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4130905	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4282054	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs4336110	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4435633	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4475032	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs4687546	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4687547	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4687548	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687549	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687550	0.86[JPT][hapmap]
rs4687551	0.80[GIH][hapmap];0.81[JPT][hapmap]
rs4687625	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4687626	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs4687629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687630	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4687633	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687636	0.86[TSI][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687637	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4687638	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687639	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4687644	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4687648	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4687650	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62253700	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62253703	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253733	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62255362	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62255364	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62255371	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255396	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62256903	0.83[ASN][1000 genomes]
rs6414569	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6445528	0.81[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.83[ASN][1000 genomes]
rs6445529	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6445531	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6445534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6445535	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6617	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67539070	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6762457	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6762813	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6768697	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6770463	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6778329	0.90[JPT][hapmap]
rs6778735	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs6778844	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.84[ASN][1000 genomes]
rs678	0.91[JPT][hapmap]
rs6786043	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6786919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6787154	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6788887	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6788993	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6790330	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6796726	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6798246	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68021750	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6803012	0.91[CEU][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6804145	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6805156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6976	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs731831	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs7611731	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7612511	0.87[ASN][1000 genomes]
rs7614498	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7614981	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs7620039	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7622694	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7623199	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7624716	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7625743	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7628578	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7638162	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7638808	0.88[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.83[ASN][1000 genomes]
rs7642198	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7646741	0.83[AFR][1000 genomes]
rs7652191	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7653028	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs767418	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8906	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9324	0.80[GIH][hapmap];0.86[JPT][hapmap]
rs9714129	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9758945	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9853056	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs9879090	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9881468	0.86[JPT][hapmap]
rs9917834	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs998909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

mRNA abundance (count:20)

SNP	Gene	Cis/trans	Tissue	Source
rs3774366	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs3774366	MUSTN1	cis	Artery Aorta	GTEx
rs3774366	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs3774366	SPCS1	cis	parietal	SCAN
rs3774366	FLJ12442	cis	multi-tissue	Pritchard
rs3774366	PBRM1	cis	Thyroid	GTEx
rs3774366	ITIH4	cis	parietal	SCAN
rs3774366	GNL3	cis	cerebellum	SCAN
rs3774366	GNL3	cis	parietal	SCAN
rs3774366	GLT8D1	cis	lymphoblastoid	seeQTL
rs3774366	PBRM1	cis	Artery Tibial	GTEx
rs3774366	GLYCTK	cis	parietal	SCAN
rs3774366	RBM6	cis	parietal	SCAN
rs3774366	NT5DC2	cis	multi-tissue	Pritchard
rs3774366	TMEM110	cis	parietal	SCAN
rs3774366	NEK4	cis	parietal	SCAN
rs3774366	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs3774366	NEK4	cis	cerebellum	SCAN
rs3774366	RBM6	cis	cerebellum	SCAN
rs3774366	NT5DC2	cis	lymphoblastoid	seeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52587200-52719200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:52591000-52688000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:52592200-52719200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:52634200-52647800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr3:52634800-52654400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:52634800-52654400	Strong transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:52634800-52686000	Strong transcription	Duodenum Mucosa	Duodenum
8	chr3:52635200-52641800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:52635200-52641800	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr3:52635400-52649000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:52635600-52654200	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:52635600-52655200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:52635800-52654400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:52635800-52654600	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr3:52635800-52654600	Strong transcription	Adipose Nuclei	Adipose
16	chr3:52635800-52657800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:52636000-52641400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:52636000-52643800	Strong transcription	Fetal Brain Male	brain
19	chr3:52636000-52646800	Strong transcription	Fetal Lung	lung
20	chr3:52636000-52651000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:52636000-52653200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:52636000-52653200	Strong transcription	Fetal Intestine Large	intestine
23	chr3:52636000-52654400	Strong transcription	Fetal Thymus	thymus
24	chr3:52636000-52655200	Strong transcription	Fetal Muscle Trunk	muscle
25	chr3:52636000-52703800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:52636000-52704000	Strong transcription	Placenta	Placenta
27	chr3:52636200-52643800	Strong transcription	HSMM	muscle
28	chr3:52636200-52653600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr3:52636200-52703200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr3:52636400-52641600	Weak transcription	Right Ventricle	heart
31	chr3:52636400-52643400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr3:52636400-52648000	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr3:52636400-52654600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:52636600-52642000	Weak transcription	Aorta	Aorta
35	chr3:52636600-52643400	Weak transcription	Spleen	Spleen
36	chr3:52636600-52644400	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr3:52636600-52644400	Strong transcription	Fetal Kidney	kidney
38	chr3:52636600-52645000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr3:52636600-52649200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr3:52636600-52654800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr3:52636600-52669200	Strong transcription	Primary B cells from peripheral blood	blood
42	chr3:52636600-52673600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:52636600-52677400	Weak transcription	Pancreas	Pancrea
44	chr3:52636800-52643400	Weak transcription	Colon Smooth Muscle	Colon
45	chr3:52636800-52646000	Strong transcription	Primary hematopoietic stem cells	blood
46	chr3:52636800-52647200	Strong transcription	Primary B cells from cord blood	blood
47	chr3:52636800-52652800	Strong transcription	Fetal Brain Female	brain
48	chr3:52636800-52654600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr3:52636800-52654800	Strong transcription	Fetal Muscle Leg	muscle
50	chr3:52636800-52662800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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