Variant report

Variant rs11177
Chromosome Location chr3:52721305-52721306
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52719000-52721400 Active TSS Colonic Mucosa Colon
2 chr3:52719200-52721400 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr3:52720000-52722000 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
4 chr3:52720200-52721400 Transcr. at gene 5' and 3' iPS-15b Cell Line embryonic stem cell
5 chr3:52720200-52721800 Transcr. at gene 5' and 3' Dnd41 blood
6 chr3:52720200-52722000 Transcr. at gene 5' and 3' HUES6 Cell Line embryonic stem cell
7 chr3:52720200-52722000 Transcr. at gene 5' and 3' Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr3:52720200-52722000 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
9 chr3:52720400-52721400 Flanking Active TSS Brain Germinal Matrix brain
10 chr3:52720400-52721400 Flanking Active TSS Duodenum Smooth Muscle Duodenum
11 chr3:52720400-52721600 Transcr. at gene 5' and 3' Muscle Satellite Cultured Cells --
12 chr3:52720400-52721800 Transcr. at gene 5' and 3' K562 blood
13 chr3:52720400-52722000 Transcr. at gene 5' and 3' iPS-20b Cell Line embryonic stem cell
14 chr3:52720400-52722200 Transcr. at gene 5' and 3' NHEK skin
15 chr3:52720600-52721400 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
16 chr3:52720600-52721400 Flanking Active TSS Pancreatic Islets Pancreatic Islet
17 chr3:52720600-52721600 Transcr. at gene 5' and 3' HUES48 Cell Line embryonic stem cell
18 chr3:52720600-52721600 Active TSS Right Ventricle heart
19 chr3:52720600-52722000 Transcr. at gene 5' and 3' H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr3:52720600-52722600 Transcr. at gene 5' and 3' A549 lung
21 chr3:52720600-52723200 Transcr. at gene 5' and 3' Breast Myoepithelial Primary Cells Breast
22 chr3:52720800-52721400 Transcr. at gene 5' and 3' H9 Derived Neuron Cultured Cells ES cell derived
23 chr3:52720800-52721400 Enhancers Primary T helper cells fromperipheralblood blood
24 chr3:52720800-52721400 Enhancers Primary mononuclear cells fromperipheralblood Blood
25 chr3:52720800-52721400 Flanking Active TSS HMEC breast
26 chr3:52720800-52721400 Flanking Active TSS HUVEC blood vessel
27 chr3:52720800-52721400 Flanking Active TSS NHLF lung
28 chr3:52720800-52721600 Transcr. at gene 5' and 3' H1 Cell Line embryonic stem cell
29 chr3:52720800-52721600 Transcr. at gene 5' and 3' hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr3:52720800-52721600 Transcr. at gene 5' and 3' iPS-18 Cell Line embryonic stem cell
31 chr3:52720800-52721600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr3:52720800-52721600 Weak transcription Aorta Aorta
33 chr3:52720800-52721600 Transcr. at gene 5' and 3' HSMM muscle
34 chr3:52720800-52721800 Genic enhancers Primary B cells from peripheral blood blood
35 chr3:52720800-52721800 Weak transcription Small Intestine intestine
36 chr3:52720800-52722400 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
37 chr3:52720800-52722400 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr3:52720800-52722400 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr3:52720800-52722800 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr3:52721000-52721400 Flanking Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr3:52721000-52721400 Genic enhancers Primary B cells from cord blood blood
42 chr3:52721000-52721400 Weak transcription Brain Angular Gyrus brain
43 chr3:52721000-52721400 Weak transcription Brain Anterior Caudate brain
44 chr3:52721000-52721400 Enhancers Fetal Heart heart
45 chr3:52721000-52721400 Enhancers Fetal Kidney kidney
46 chr3:52721000-52721400 Weak transcription Lung lung
47 chr3:52721000-52721400 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr3:52721000-52721400 Enhancers Thymus Thymus
49 chr3:52721000-52721400 Enhancers Spleen Spleen
50 chr3:52721000-52721400 Flanking Active TSS HepG2 liver

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