Variant report

Variant	rs2230534
Chromosome Location	chr3:52802402-52802403
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52800007..52802785-chr3:52803271..52804893,2	K562	blood:
2	chr3:52799929..52802463-chr3:52808466..52811160,2	K562	blood:

Variant related genes	Relation type
ENSG00000114904	Chromatin interaction

Extended variants
information (count: 222 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:217)

rs_ID	r²[population]
rs1014969	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1029871	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1042779	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10433615	0.83[EUR][1000 genomes]
rs10510760	0.81[ASN][1000 genomes]
rs1075653	0.84[EUR][1000 genomes]
rs1076425	0.84[EUR][1000 genomes]
rs10780035	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10865973	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10865974	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130307	0.82[EUR][1000 genomes]
rs11130308	0.82[EUR][1000 genomes]
rs11130310	0.82[EUR][1000 genomes]
rs11130311	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11130312	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11130313	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11130314	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130315	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130317	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130319	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130321	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130323	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130324	0.89[ASN][1000 genomes]
rs11130325	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130326	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130327	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11177	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11235	0.83[ASN][1000 genomes]
rs11708075	0.84[EUR][1000 genomes]
rs11709448	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11714030	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714088	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11714419	0.84[EUR][1000 genomes]
rs11714565	0.81[EUR][1000 genomes]
rs11716747	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11717043	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11717836	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11718420	0.80[EUR][1000 genomes]
rs11718509	0.83[EUR][1000 genomes]
rs11719514	0.82[EUR][1000 genomes]
rs11720159	0.81[EUR][1000 genomes]
rs11720243	0.80[EUR][1000 genomes]
rs11720432	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12486554	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12486847	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12487445	0.82[EUR][1000 genomes]
rs12487591	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12488461	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12488527	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12496476	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12496634	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12497998	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12498066	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12629701	0.80[EUR][1000 genomes]
rs12632265	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12632381	0.82[EUR][1000 genomes]
rs12635140	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13060675	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13061253	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13061423	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13064064	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13065019	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13065851	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13068293	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13069481	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13071584	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074853	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13076193	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13079063	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13081031	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13082208	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13082960	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13085331	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13085775	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13085895	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13086297	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13086898	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13087772	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13095332	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1468638	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1561337	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17264436	0.81[EUR][1000 genomes]
rs1866268	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2019065	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2028216	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2071506	0.83[EUR][1000 genomes]
rs2071507	0.83[EUR][1000 genomes]
rs2071508	0.83[EUR][1000 genomes]
rs2072390	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2079929	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2083180	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2109634	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2118540	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2159644	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2164884	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2164885	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2230535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239549	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2239550	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2239551	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2268023	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2268024	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268025	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2268026	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2268027	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2270197	0.84[EUR][1000 genomes]
rs2284350	0.85[EUR][1000 genomes]
rs2286798	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2286800	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2289247	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2289250	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2300149	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2336145	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2336148	0.80[AFR][1000 genomes]
rs2336149	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2336542	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2336545	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2590846	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2878726	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33967311	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34017441	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34115864	0.82[EUR][1000 genomes]
rs34157897	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34168767	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34173654	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34215106	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34291015	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34537256	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34610142	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34610878	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34739010	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34754793	0.82[EUR][1000 genomes]
rs34757451	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34918356	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34954168	0.83[EUR][1000 genomes]
rs35107891	0.82[EUR][1000 genomes]
rs35211965	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35212380	0.82[ASN][1000 genomes]
rs35249778	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35315313	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35409678	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35526119	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35976524	0.83[ASN][1000 genomes]
rs3733039	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3733041	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3733045	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3755798	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3755806	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3774354	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3774355	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3774365	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3774366	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3852066	0.82[EUR][1000 genomes]
rs4130905	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4336110	0.81[EUR][1000 genomes]
rs4687547	0.82[EUR][1000 genomes]
rs4687548	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4687549	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4687551	0.83[EUR][1000 genomes]
rs4687629	0.81[EUR][1000 genomes]
rs4687630	0.82[EUR][1000 genomes]
rs4687633	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4687636	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4687637	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4687638	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4687639	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4687644	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687648	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687650	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253700	0.85[EUR][1000 genomes]
rs62253703	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62253733	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62255362	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62255371	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62255396	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6414570	0.85[EUR][1000 genomes]
rs6445529	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6445531	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6445534	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6445535	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6617	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67539070	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6762457	0.83[EUR][1000 genomes]
rs6762813	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6768697	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6770463	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6778329	0.84[EUR][1000 genomes]
rs678	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6787154	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6790330	0.83[EUR][1000 genomes]
rs6792369	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68021750	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6803012	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6804145	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6805156	0.80[EUR][1000 genomes]
rs6976	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs746694	0.82[EUR][1000 genomes]
rs7611731	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7614498	0.81[EUR][1000 genomes]
rs7620039	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7622694	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7623199	0.82[EUR][1000 genomes]
rs7624716	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7625743	0.81[EUR][1000 genomes]
rs7628578	0.85[EUR][1000 genomes]
rs7638162	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7642198	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7646741	0.89[ASN][1000 genomes]
rs7652191	0.81[EUR][1000 genomes]
rs7653028	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs767418	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8906	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9324	0.84[EUR][1000 genomes]
rs9714129	0.80[EUR][1000 genomes]
rs9881468	0.81[EUR][1000 genomes]
rs9917834	0.82[EUR][1000 genomes]
rs998909	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv508219	chr3:52741193-52803899	Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv834698	chr3:52749983-52928219	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2230534	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs2230534	PBRM1	cis	Artery Tibial	GTEx
rs2230534	PBRM1	cis	Thyroid	GTEx
rs2230534	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs2230534	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs2230534	NT5DC2	cis	multi-tissue	Pritchard

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52741600-52804000	Weak transcription	Psoas Muscle	Psoas
2	chr3:52763800-52802600	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:52764000-52802800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:52764400-52802600	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:52766400-52802600	Strong transcription	Fetal Thymus	thymus
6	chr3:52767600-52802600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:52767600-52803400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:52768000-52803600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:52768800-52803000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:52774000-52803400	Weak transcription	K562	blood
11	chr3:52775200-52802600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:52775800-52802800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:52775800-52802800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:52783200-52803800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:52784800-52804000	Weak transcription	Aorta	Aorta
16	chr3:52786200-52803600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:52786400-52803600	Weak transcription	Stomach Mucosa	stomach
18	chr3:52786400-52803800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:52786600-52802600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:52786800-52802600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:52786800-52802600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:52787600-52803600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:52787600-52803600	Weak transcription	Colonic Mucosa	Colon
24	chr3:52787800-52803600	Weak transcription	Gastric	stomach
25	chr3:52787800-52804000	Weak transcription	Right Ventricle	heart
26	chr3:52788200-52802600	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:52788200-52803000	Weak transcription	Pancreas	Pancrea
28	chr3:52788200-52803600	Weak transcription	Esophagus	oesophagus
29	chr3:52790200-52802800	Strong transcription	Placenta	Placenta
30	chr3:52790600-52802600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:52790600-52802600	Strong transcription	Duodenum Mucosa	Duodenum
32	chr3:52790800-52802600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:52791000-52802600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:52791000-52802800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr3:52791000-52803200	Strong transcription	Fetal Muscle Trunk	muscle
36	chr3:52791200-52802600	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr3:52791400-52804000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr3:52792600-52802600	Strong transcription	Fetal Brain Female	brain
39	chr3:52792800-52802600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:52792800-52802600	Strong transcription	Fetal Muscle Leg	muscle
41	chr3:52794200-52803600	Weak transcription	Ovary	ovary
42	chr3:52794200-52803600	Weak transcription	Thymus	Thymus
43	chr3:52794200-52803800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr3:52794800-52802600	Strong transcription	Fetal Intestine Large	intestine
45	chr3:52795200-52803400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr3:52796600-52802800	Strong transcription	Fetal Intestine Small	intestine
47	chr3:52798000-52803400	Weak transcription	Fetal Heart	heart
48	chr3:52798000-52803600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr3:52798000-52804000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr3:52798400-52802600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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