Variant report

Variant	rs1014969
Chromosome Location	chr3:52808341-52808342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52808090..52808654-chr7:132464274..132465134,2	MCF-7	breast:

Extended variants
information (count: 196 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:191)

rs_ID	r²[population]
rs1029871	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1042779	0.83[CHB][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10510760	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1075653	0.86[JPT][hapmap]
rs1076425	0.86[JPT][hapmap]
rs10780035	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10865973	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10865974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1108842	1.00[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs11130308	0.82[EUR][1000 genomes]
rs11130310	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11130312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11130313	0.80[ASN][1000 genomes]
rs11130314	0.81[ASN][1000 genomes]
rs11130315	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs11130317	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11130319	0.83[ASN][1000 genomes]
rs11130321	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130323	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130324	0.87[ASN][1000 genomes]
rs11130325	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130326	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130327	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11177	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.81[ASN][1000 genomes]
rs11235	0.95[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs11709448	0.80[ASN][1000 genomes]
rs11714030	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11714088	0.90[ASN][1000 genomes]
rs11714419	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs11714565	0.81[EUR][1000 genomes]
rs11716747	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11717836	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11718420	0.80[EUR][1000 genomes]
rs11720159	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs11720243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs12486554	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12486847	0.81[ASN][1000 genomes]
rs12487445	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs12487591	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs12488461	0.91[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.81[ASN][1000 genomes]
rs12496634	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12497998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12629701	0.80[EUR][1000 genomes]
rs12632265	0.83[ASN][1000 genomes]
rs12635140	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13061253	0.81[ASN][1000 genomes]
rs13061423	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13064064	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs13065019	0.80[ASN][1000 genomes]
rs13065851	0.80[ASN][1000 genomes]
rs13068293	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs13069481	0.80[ASN][1000 genomes]
rs13071584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13074853	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13076193	0.81[ASN][1000 genomes]
rs13079063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13081031	0.80[ASN][1000 genomes]
rs13082208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13082960	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13083798	1.00[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs13085775	0.84[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13085895	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs13086297	0.80[ASN][1000 genomes]
rs13087772	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13095332	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1468638	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1561337	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs17264436	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1866268	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2019065	0.83[CHB][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2028216	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs2071506	0.86[JPT][hapmap]
rs2071507	0.91[JPT][hapmap]
rs2071508	0.86[JPT][hapmap]
rs2072390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2079929	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2083180	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2109634	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2118540	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2159644	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2164884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap]
rs2164885	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2230534	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2230535	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2239549	0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs2239550	0.82[EUR][1000 genomes]
rs2239551	0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs2239699	0.84[JPT][hapmap]
rs2240919	0.86[JPT][hapmap]
rs2240920	0.91[JPT][hapmap]
rs2268023	0.86[JPT][hapmap]
rs2268024	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2268025	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2268026	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2268027	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2270197	0.86[JPT][hapmap]
rs2276824	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2286798	0.91[JPT][hapmap]
rs2286800	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2289247	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2289250	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.80[ASN][1000 genomes]
rs2300149	0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs2336146	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs2336149	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2336542	0.95[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2336545	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2535629	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2577831	1.00[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs2590838	1.00[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs2590846	0.81[ASN][1000 genomes]
rs2710323	0.83[GIH][hapmap]
rs2878726	0.88[ASN][1000 genomes]
rs33967311	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.80[ASN][1000 genomes]
rs34017441	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34157897	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34291015	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34341238	0.80[AMR][1000 genomes]
rs34610142	0.83[ASN][1000 genomes]
rs34610878	0.92[ASN][1000 genomes]
rs34739010	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34754793	0.82[EUR][1000 genomes]
rs34757451	0.80[ASN][1000 genomes]
rs34918356	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35211965	0.80[ASN][1000 genomes]
rs35212380	0.81[ASN][1000 genomes]
rs35315313	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35409678	0.81[ASN][1000 genomes]
rs35526119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35976524	0.81[ASN][1000 genomes]
rs3617	0.82[CHB][hapmap]
rs3733039	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3733041	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3733045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3755798	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3755806	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap]
rs3774354	0.86[JPT][hapmap]
rs3774355	0.81[JPT][hapmap]
rs3774365	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3774366	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs3852066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs4130905	0.81[ASN][1000 genomes]
rs4435633	0.82[AMR][1000 genomes]
rs4687548	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4687549	0.94[ASN][1000 genomes]
rs4687550	0.86[JPT][hapmap]
rs4687551	0.81[JPT][hapmap]
rs4687629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4687636	0.86[TSI][hapmap]
rs4687637	0.82[EUR][1000 genomes]
rs4687638	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.80[ASN][1000 genomes]
rs4687644	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4687648	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4687650	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62253733	0.80[ASN][1000 genomes]
rs62255362	0.81[ASN][1000 genomes]
rs62255371	0.88[ASN][1000 genomes]
rs62255396	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6414570	0.84[EUR][1000 genomes]
rs6445529	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6445531	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6445534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6445535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6617	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67539070	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6762813	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.81[ASN][1000 genomes]
rs6768697	0.81[ASN][1000 genomes]
rs6778329	0.90[JPT][hapmap]
rs678	0.91[JPT][hapmap]
rs6787154	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792369	0.84[AMR][1000 genomes]
rs6803012	0.91[CEU][hapmap];0.83[ASN][1000 genomes]
rs6804145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6805156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs6976	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.81[ASN][1000 genomes]
rs7611731	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7614498	0.81[EUR][1000 genomes]
rs7620039	0.85[ASN][1000 genomes]
rs7622694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7624716	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7625743	0.81[EUR][1000 genomes]
rs7638162	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7646741	0.87[ASN][1000 genomes]
rs7652191	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs7653028	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs767418	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8906	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.83[ASN][1000 genomes]
rs9324	0.86[JPT][hapmap]
rs9879090	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs9881468	0.86[JPT][hapmap]
rs9917834	0.82[EUR][1000 genomes]
rs998909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv834698	chr3:52749983-52928219	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1010761	chr3:52804547-52851258	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs1014969	PBRM1	cis	Artery Tibial	GTEx
rs1014969	TMEM110	cis	parietal	SCAN
rs1014969	ITIH4	cis	parietal	SCAN
rs1014969	RBM6	cis	parietal	SCAN
rs1014969	SPCS1	cis	parietal	SCAN
rs1014969	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs1014969	NEK4	cis	parietal	SCAN
rs1014969	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs1014969	MUSTN1	cis	Artery Aorta	GTEx
rs1014969	PBRM1	cis	Thyroid	GTEx
rs1014969	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs1014969	GNL3	cis	cerebellum	SCAN
rs1014969	GLT8D1	cis	lymphoblastoid	seeQTL
rs1014969	NT5DC2	cis	lymphoblastoid	seeQTL
rs1014969	RBM6	cis	cerebellum	SCAN
rs1014969	GNL3	cis	parietal	SCAN
rs1014969	NEK4	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52805400-52809600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:52805600-52808800	Enhancers	HepG2	liver
3	chr3:52805600-52809200	Weak transcription	Fetal Heart	heart
4	chr3:52805600-52809600	Weak transcription	Thymus	Thymus
5	chr3:52805600-52825800	Weak transcription	Right Ventricle	heart
6	chr3:52805800-52808600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:52805800-52808600	Weak transcription	Fetal Intestine Small	intestine
8	chr3:52805800-52809000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:52805800-52809000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:52805800-52809200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:52805800-52809200	Weak transcription	Fetal Thymus	thymus
12	chr3:52805800-52809400	Weak transcription	K562	blood
13	chr3:52805800-52810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:52805800-52812000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:52806000-52808600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr3:52806000-52808800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr3:52806000-52809000	Weak transcription	Stomach Mucosa	stomach
18	chr3:52806000-52809200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr3:52806000-52810000	Weak transcription	Pancreas	Pancrea
20	chr3:52806000-52811600	Weak transcription	Adipose Nuclei	Adipose
21	chr3:52806600-52808600	Weak transcription	Fetal Intestine Large	intestine
22	chr3:52806800-52810400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:52808000-52809400	Flanking Active TSS	Liver	Liver
24	chr3:52808200-52808400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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