Variant report

Variant	rs9881468
Chromosome Location	chr3:52828628-52828629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:31)
CpG islands
(count:183)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:31 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:52828167-52829123	HepG2	liver:	n/a	n/a
2	HEY1	chr3:52828037-52829130	HepG2	liver:	n/a	n/a
3	EP300	chr3:52828483-52828990	HepG2	liver:	n/a	n/a
4	SRF	chr3:52828622-52828937	HepG2	liver:	n/a	chr3:52828776-52828794
5	SRF	chr3:52828623-52828907	HepG2	liver:	n/a	chr3:52828776-52828794
6	MBD4	chr3:52828052-52828871	HepG2	liver:	n/a	n/a
7	BHLHE40	chr3:52828615-52829002	HepG2	liver:	n/a	n/a
8	RCOR1	chr3:52828400-52829020	HepG2	liver:	n/a	n/a
9	MAZ	chr3:52828164-52828956	HepG2	liver:	n/a	n/a
10	HEY1	chr3:52828466-52828971	HepG2	liver:	n/a	n/a
11	POLR2A	chr3:52828100-52829094	HepG2	liver:	n/a	n/a
12	SIN3AK20	chr3:52828619-52828903	HepG2	liver:	n/a	n/a
13	MAX	chr3:52828157-52828969	HepG2	liver:	n/a	n/a
14	MYBL2	chr3:52828031-52829047	HepG2	liver:	n/a	n/a
15	NFIC	chr3:52828531-52828904	HepG2	liver:	n/a	n/a
16	TBP	chr3:52828604-52829006	HepG2	liver:	n/a	n/a
17	POLR2A	chr3:52828113-52829875	HepG2	liver:	n/a	n/a
18	MXI1	chr3:52828069-52828936	HepG2	liver:	n/a	n/a
19	HDAC2	chr3:52828393-52828960	HepG2	liver:	n/a	n/a
20	EP300	chr3:52828413-52828794	HepG2	liver:	n/a	n/a
21	POLR2A	chr3:52828594-52829011	HepG2	liver:	n/a	n/a
22	HNF4A	chr3:52828368-52828878	HepG2	liver:	n/a	chr3:52828484-52828499 chr3:52828486-52828499 chr3:52828485-52828498 chr3:52828486-52828498 chr3:52828485-52828499 chr3:52828483-52828501 chr3:52828486-52828498 chr3:52828485-52828499 chr3:52828486-52828498
23	CEBPD	chr3:52828510-52828965	HepG2	liver:	n/a	n/a
24	NFIC	chr3:52828041-52828916	HepG2	liver:	n/a	n/a
25	POLR2A	chr3:52828483-52829021	HepG2	liver:	n/a	n/a
26	YY1	chr3:52828502-52829097	HepG2	liver:	n/a	n/a
27	RXRA	chr3:52828074-52828937	HepG2	liver:	n/a	chr3:52828486-52828500 chr3:52828484-52828500
28	MAX	chr3:52828001-52830006	HepG2	liver:	n/a	chr3:52829250-52829260
29	POLR2A	chr3:52828351-52829011	HepG2	liver:	n/a	n/a
30	REST	chr3:52828551-52828999	HepG2	liver:	n/a	n/a
31	POLR2A	chr3:52828507-52828957	HepG2	liver:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:52828594-52828644	GM12878	blood:	n/a
2	chr3:52828628-52828678	AoSMC	blood vessel:	n/a
3	chr3:52828628-52828678	IMR90	lung:	fetal
4	chr3:52828628-52828678	H1-hESC	embryonic stem cell:	embryo
5	chr3:52828594-52828644	SK-N-SH	brain:	n/a
6	chr3:52828594-52828644	SK-N-SH_RA	brain:	n/a
7	chr3:52828628-52828678	U87	brain:	n/a
8	chr3:52828594-52828644	CMK	blood:	n/a
9	chr3:52828594-52828644	HNPCEpiC	eye:	n/a
10	chr3:52828594-52828644	GM06990	blood:	n/a
11	chr3:52828594-52828644	HL-60	blood:	n/a
12	chr3:52828628-52828678	HCM	heart:	n/a
13	chr3:52828583-52828633	MCF-7	breast:	n/a
14	chr3:52828594-52828644	ProgFib	skin:	n/a
15	chr3:52828583-52828633	NHDF-neo	bronchial:	n/a
16	chr3:52828583-52828633	ProgFib	skin:	n/a
17	chr3:52828628-52828678	HRE	kidney:	n/a
18	chr3:52828583-52828633	NHBE	bronchial:	n/a
19	chr3:52828583-52828633	Caco-2	colon:	n/a
20	chr3:52828594-52828644	NB4	blood:	n/a
21	chr3:52828628-52828678	HNPCEpiC	eye:	n/a
22	chr3:52828594-52828644	PANC-1	pancreas:	n/a
23	chr3:52828628-52828678	HAEpiC	amniotic membrane:	n/a
24	chr3:52828583-52828633	K562	blood:	n/a
25	chr3:52828628-52828678	RPTEC	kidney:	n/a
26	chr3:52828628-52828678	LNCaP	prostate:	n/a
27	chr3:52828594-52828644	HCT-116	colon:	n/a
28	chr3:52828583-52828633	GM06990	blood:	n/a
29	chr3:52828594-52828644	T-47D	breast:	n/a
30	chr3:52828628-52828678	Hepatocyte	liver:	n/a
31	chr3:52828628-52828678	HRPEpiC	eye:	n/a
32	chr3:52828594-52828644	MCF10A-Er-Src	breast:	n/a
33	chr3:52828594-52828644	AoSMC	blood vessel:	n/a
34	chr3:52828628-52828678	SAEC	small airway:	n/a
35	chr3:52828594-52828644	BJ	skin:	n/a
36	chr3:52828594-52828644	HIPEpiC	eye:	n/a
37	chr3:52828628-52828678	MCF-7	breast:	n/a
38	chr3:52828628-52828678	BJ	skin:	n/a
39	chr3:52828628-52828678	PFSK-1	brain:	n/a
40	chr3:52828583-52828633	LNCaP	prostate:	n/a
41	chr3:52828594-52828644	GM19239	blood:	n/a
42	chr3:52828594-52828644	HCM	heart:	n/a
43	chr3:52828628-52828678	HRCEpiC	kidney:	n/a
44	chr3:52828594-52828644	HEEpiC	esophagus:	n/a
45	chr3:52828583-52828633	HPAEpiC	pulmonary alveolar:	n/a
46	chr3:52828594-52828644	H1-hESC	embryonic stem cell:	embryo
47	chr3:52828594-52828644	AG09309	skin:	n/a
48	chr3:52828594-52828644	Hela-S3	cervix:	n/a
49	chr3:52828583-52828633	Hepatocyte	liver:	n/a
50	chr3:52828594-52828644	K562	blood:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:52802780..52807602-chr3:52827391..52831755,5	K562	blood:
2	chr3:52827101..52830669-chr3:52833208..52834941,3	K562	blood:
3	chr3:52812843..52815732-chr3:52828403..52831078,2	K562	blood:
4	chr3:52827519..52829330-chr3:52834424..52837850,3	MCF-7	breast:

No data

Variant related genes	Relation type
ITIH3	TF binding region
ITIH3	CpG island
ENSG00000114904	Chromatin interaction
ENSG00000055957	Chromatin interaction
ENSG00000162267	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 21 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs1014969	0.86[JPT][hapmap]
rs1029871	0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs1042779	0.81[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10510760	0.94[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap]
rs1075653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1076425	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10780035	0.97[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs10865973	0.86[JPT][hapmap]
rs10865974	0.86[JPT][hapmap]
rs11130310	0.81[JPT][hapmap]
rs11130312	0.86[JPT][hapmap]
rs11130315	0.86[GIH][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap]
rs11130317	0.86[GIH][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap]
rs11130323	0.86[JPT][hapmap]
rs11130327	0.80[EUR][1000 genomes]
rs11177	0.97[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap]
rs11714419	0.94[GIH][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap]
rs11716747	0.86[JPT][hapmap]
rs11717836	0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12487591	0.86[JPT][hapmap];0.80[MEX][hapmap]
rs12488461	0.97[GIH][hapmap];0.86[JPT][hapmap]
rs12496634	0.86[GIH][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap]
rs12497998	0.86[JPT][hapmap]
rs12635140	0.86[JPT][hapmap]
rs13064064	0.84[GIH][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap]
rs13068293	0.86[GIH][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap]
rs13071584	0.86[JPT][hapmap]
rs13079063	0.90[JPT][hapmap]
rs13082208	0.89[JPT][hapmap]
rs13082960	0.86[JPT][hapmap]
rs13083798	0.81[JPT][hapmap]
rs13085895	0.86[JPT][hapmap]
rs1561337	0.84[GIH][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap]
rs1866268	0.86[JPT][hapmap]
rs2019065	0.86[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2028216	0.97[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs2071044	0.83[CHB][hapmap]
rs2071506	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2071507	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2071508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2072390	0.86[JPT][hapmap]
rs2079929	0.86[JPT][hapmap]
rs2083180	0.86[JPT][hapmap]
rs2118540	0.80[JPT][hapmap]
rs2159644	0.86[JPT][hapmap]
rs2164884	0.90[JPT][hapmap];0.80[MEX][hapmap]
rs2164885	0.90[JPT][hapmap]
rs2230534	0.81[EUR][1000 genomes]
rs2230535	0.86[JPT][hapmap];0.80[MEX][hapmap];0.81[EUR][1000 genomes]
rs2239549	0.95[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2239550	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2239551	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2239699	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2240919	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2240920	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2268023	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2268024	0.82[EUR][1000 genomes]
rs2268025	0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs2268026	0.86[JPT][hapmap]
rs2268027	0.85[JPT][hapmap]
rs2270197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2284350	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2284351	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2286798	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.80[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2289247	0.86[JPT][hapmap]
rs2289250	0.86[GIH][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap]
rs2300149	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2336149	0.86[JPT][hapmap]
rs2336545	0.86[JPT][hapmap];0.80[MEX][hapmap]
rs2535629	0.86[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2710323	0.91[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2710331	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33967311	0.86[GIH][hapmap];0.86[JPT][hapmap]
rs34017441	0.91[JPT][hapmap]
rs35526119	0.86[JPT][hapmap]
rs3617	0.82[JPT][hapmap]
rs3733039	0.86[JPT][hapmap]
rs3733041	0.86[JPT][hapmap]
rs3733045	0.86[JPT][hapmap]
rs3755798	0.86[JPT][hapmap]
rs3755806	0.84[GIH][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap]
rs3774354	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774355	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774365	0.86[JPT][hapmap]
rs3774366	0.86[JPT][hapmap]
rs4481150	0.81[JPT][hapmap]
rs4687548	0.86[JPT][hapmap]
rs4687550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4687551	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4687552	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687638	0.94[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs4687650	0.82[EUR][1000 genomes]
rs4687654	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6445534	0.82[JPT][hapmap]
rs6445535	0.86[JPT][hapmap]
rs6617	0.86[JPT][hapmap]
rs6762813	0.97[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs6778329	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs678	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792369	0.86[ASN][1000 genomes]
rs6804145	0.86[JPT][hapmap]
rs6976	0.97[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs736408	0.81[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs746694	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7611731	0.86[JPT][hapmap]
rs7622694	0.86[JPT][hapmap]
rs7624716	0.86[JPT][hapmap]
rs767418	0.85[JPT][hapmap]
rs8906	0.97[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs9324	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs998909	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv834698	chr3:52749983-52928219	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1010761	chr3:52804547-52851258	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv1810629	chr3:52817031-52869635	Weak transcription Active TSS Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv876797	chr3:52817675-52873984	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:21)

SNP	Gene	Cis/trans	Tissue	Source
rs9881468	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs9881468	TMEM110	cis	cerebellum	SCAN
rs9881468	WDR6	cis	cerebellum	SCAN
rs9881468	GNL3	cis	cerebellum	SCAN
rs9881468	ITIH4	cis	lymphoblastoid	seeQTL
rs9881468	PBRM1	cis	Thyroid	GTEx
rs9881468	ITIH4-AS1	cis	Artery Aorta	GTEx
rs9881468	TMEM110	cis	parietal	SCAN
rs9881468	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs9881468	GNL3	cis	parietal	SCAN
rs9881468	NEK4	cis	parietal	SCAN
rs9881468	RBM6	cis	parietal	SCAN
rs9881468	MUSTN1	cis	Artery Aorta	GTEx
rs9881468	GLT8D1	cis	lymphoblastoid	seeQTL
rs9881468	SPCS1	cis	parietal	SCAN
rs9881468	SEMA3G	cis	parietal	SCAN
rs9881468	ITIH4	cis	parietal	SCAN
rs9881468	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs9881468	NT5DC2	cis	lymphoblastoid	seeQTL
rs9881468	RBM6	cis	cerebellum	SCAN
rs9881468	NEK4	cis	cerebellum	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52824000-52832800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:52825800-52836200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:52826000-52829000	Enhancers	Fetal Muscle Leg	muscle
4	chr3:52826600-52828800	Weak transcription	Pancreas	Pancrea
5	chr3:52827000-52830600	Enhancers	Spleen	Spleen
6	chr3:52827400-52829000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:52827400-52829000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:52827600-52829000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:52827600-52829800	Flanking Active TSS	HepG2	liver
10	chr3:52827800-52829200	Enhancers	Fetal Intestine Small	intestine
11	chr3:52827800-52829400	Enhancers	Fetal Intestine Large	intestine
12	chr3:52827800-52830000	Enhancers	Fetal Muscle Trunk	muscle
13	chr3:52827800-52832000	Weak transcription	HSMM	muscle
14	chr3:52828000-52828800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:52828000-52829000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:52828000-52830200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr3:52828200-52829000	Flanking Active TSS	Liver	Liver
18	chr3:52828200-52829200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:52828200-52829600	Enhancers	Placenta	Placenta
20	chr3:52828200-52835800	Weak transcription	HSMMtube	muscle
21	chr3:52828400-52829000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:52828400-52829000	Enhancers	NHDF-Ad	bronchial
23	chr3:52828400-52829000	Enhancers	Osteobl	bone
24	chr3:52828400-52829200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:52828600-52829000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:52828600-52832600	Weak transcription	Stomach Mucosa	stomach

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