Variant report

Variant	rs3733039
Chromosome Location	chr3:52719088-52719089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr3:52717818-52721863	SK-N-SH	brain:	n/a	n/a
2	JUN	chr3:52719081-52720693	K562	blood:	n/a	chr3:52720134-52720143
3	TBP	chr3:52718933-52720646	GM12878	blood:	n/a	n/a
4	POLR2A	chr3:52718446-52723739	IMR90	lung:	n/a	n/a
5	POLR2A	chr3:52718374-52724293	MCF10A-Er-Src	breast:	n/a	n/a
6	HCFC1	chr3:52717761-52720928	Hela-S3	cervix:	n/a	n/a
7	CHD1	chr3:52719087-52720687	GM12878	blood:	n/a	chr3:52719550-52719557
8	PML	chr3:52719043-52720999	GM12878	blood:	n/a	n/a
9	POLR2A	chr3:52718922-52721464	PFSK-1	brain:	n/a	n/a
10	NFIC	chr3:52719035-52719636	GM12878	blood:	n/a	n/a
11	STAT3	chr3:52718856-52719295	MCF10A-Er-Src	breast:	n/a	n/a
12	MYC	chr3:52718689-52719208	MCF10A-Er-Src	breast:	n/a	n/a
13	MTA3	chr3:52719033-52719629	GM12878	blood:	n/a	n/a
14	CHD1	chr3:52718172-52721742	IMR90	lung:	n/a	chr3:52719550-52719557
15	REST	chr3:52718945-52720811	H1-neurons	neurons:	n/a	chr3:52719716-52719729
16	TCF7L2	chr3:52718643-52719529	HEK293	kidney:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:52487997..52491865-chr3:52718755..52722667,5	MCF-7	breast:
2	chr3:52567553..52570571-chr3:52718365..52721514,3	MCF-7	breast:
3	chr11:65265193..65266115-chr3:52718600..52719591,2	Hela-S3	cervix:
4	chr3:52566406..52569677-chr3:52718507..52721358,5	MCF-7	breast:
5	chr3:52443115..52446014-chr3:52718098..52719635,2	K562	blood:
6	chr3:52452815..52455679-chr3:52718724..52720785,2	MCF-7	breast:
7	chr3:52568115..52572187-chr3:52717267..52721555,8	K562	blood:
8	chr3:52567779..52572340-chr3:52718708..52722750,6	K562	blood:
9	chr3:52712073..52717938-chr3:52718038..52722104,14	K562	blood:
10	chr3:52718628..52724105-chr3:52738117..52743946,12	MCF-7	breast:
11	chr3:52718708..52722190-chr3:52722401..52727615,8	MCF-7	breast:
12	chr3:52718552..52720204-chr3:53288548..53290177,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000252787	TF binding region
SNORD19	TF binding region
GNL3	TF binding region
ENSG00000010318	Chromatin interaction
ENSG00000016864	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000168273	Chromatin interaction
ENSG00000010322	Chromatin interaction
ENSG00000163931	Chromatin interaction
ENSG00000212452	Chromatin interaction
ENSG00000252787	Chromatin interaction
ENSG00000163939	Chromatin interaction
ENSG00000114902	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000212493	Chromatin interaction
ENSG00000114854	Chromatin interaction
ENSG00000222345	Chromatin interaction
ENSG00000163938	Chromatin interaction
ENSG00000238862	Chromatin interaction
ENSG00000163930	Chromatin interaction
ENSG00000168268	Chromatin interaction

Extended variants
information (count: 276 )
Associated
traits (count: 18 )

rSNPs within LD-proxies of this variant (count:275)

rs_ID	r²[population]
rs1010552	0.84[CHB][hapmap]
rs1010553	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs1010554	0.91[CHB][hapmap];0.84[CHD][hapmap]
rs1014969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1029871	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1042779	0.83[CHB][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap]
rs10433615	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10510760	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1075653	0.82[GIH][hapmap];0.86[JPT][hapmap];0.84[MKK][hapmap]
rs1076425	0.82[GIH][hapmap];0.86[JPT][hapmap]
rs10780035	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10865973	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10865974	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10933	0.91[ASN][1000 genomes]
rs1108842	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs11130307	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130308	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11130310	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11130311	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130313	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130314	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130315	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130317	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130318	0.82[EUR][1000 genomes]
rs11130319	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130321	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130323	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130324	0.81[ASN][1000 genomes]
rs11130325	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130326	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130327	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11177	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235	0.95[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs1133415	0.91[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs11708075	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11709448	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11711421	0.95[JPT][hapmap]
rs11714030	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11714088	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11714419	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11714565	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11716747	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11717043	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11717836	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11718420	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11718509	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11719514	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11720159	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11720243	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11720432	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12486554	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12486847	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12487445	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12487591	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12488461	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12488527	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12489828	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12493107	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12496476	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12496634	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497998	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12498066	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12629699	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12629701	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12632265	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12632381	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12635140	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13060675	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13061253	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13061423	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13063160	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap]
rs13064064	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13065019	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13065851	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13068293	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13069481	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13071584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13074853	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13076193	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13078422	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13079063	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13081028	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs13081031	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13081155	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13082208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13082960	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13083798	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13085331	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13085775	0.94[ASW][hapmap];0.84[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13085895	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13086297	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13086898	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13087772	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13094778	0.83[AMR][1000 genomes]
rs13095332	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13098776	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13303	0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs1468638	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1561337	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17052256	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs17052259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17264436	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1866268	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1961958	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs1961959	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2019065	0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs2028216	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2071506	0.82[GIH][hapmap];0.86[JPT][hapmap];0.84[MKK][hapmap]
rs2071507	0.91[JPT][hapmap]
rs2071508	0.82[GIH][hapmap];0.86[JPT][hapmap]
rs2072390	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2079929	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2083180	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2109634	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2118540	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2159644	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2164884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2164885	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2230534	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2230535	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2239549	0.86[JPT][hapmap];0.82[TSI][hapmap]
rs2239551	0.86[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs2239699	0.84[JPT][hapmap]
rs2240919	0.86[JPT][hapmap]
rs2240920	0.91[JPT][hapmap];0.87[MEX][hapmap]
rs2251219	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs2268023	0.86[JPT][hapmap]
rs2268024	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2268025	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2268026	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2268027	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2270197	0.86[JPT][hapmap]
rs2276824	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2286798	0.82[GIH][hapmap];0.91[JPT][hapmap];0.81[TSI][hapmap]
rs2286800	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2289247	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289249	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap]
rs2289250	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2300149	0.82[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs2336145	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2336146	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2336148	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2336149	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2336542	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2336545	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2535629	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2577831	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2590838	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2590846	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2878628	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs2878726	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs33967311	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34017441	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34115864	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34157897	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34168767	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34173654	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34215106	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34291015	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34341238	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34537256	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34610142	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34610878	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34739010	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34754793	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34757451	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34918356	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34954168	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35107891	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35211965	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35212380	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs35249778	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35315313	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35409678	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35526119	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35976524	0.94[ASN][1000 genomes]
rs3617	0.82[CHB][hapmap]
rs3733041	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733045	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3755798	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3755806	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3774349	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3774354	0.86[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs3774355	0.81[JPT][hapmap]
rs3774365	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3774366	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3796353	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs3852066	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4130905	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282054	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs4336110	0.85[EUR][1000 genomes]
rs4435633	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4475032	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs4687546	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687547	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687548	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4687549	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687550	0.86[JPT][hapmap]
rs4687551	0.82[GIH][hapmap];0.81[JPT][hapmap]
rs4687625	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4687626	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs4687629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4687630	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687633	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4687636	0.86[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687637	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687638	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687639	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687644	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687648	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687650	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62253700	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253703	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62253733	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255362	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62255364	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62255371	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62255396	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6414569	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6414570	0.83[AMR][1000 genomes]
rs6445528	0.83[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs6445529	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6445531	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6445535	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6617	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67539070	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6762457	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6762813	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6768697	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6770463	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6778329	0.90[JPT][hapmap]
rs6778735	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs6778844	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs678	0.91[JPT][hapmap]
rs6786043	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6786919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs6787154	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6788887	0.80[EUR][1000 genomes]
rs6788993	0.80[EUR][1000 genomes]
rs6790330	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6796726	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6798246	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs68021750	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6803012	0.91[CEU][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6804145	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6805156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6976	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs731831	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs7611731	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7612511	0.82[ASN][1000 genomes]
rs7614498	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7614981	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs7620039	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7622694	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7623199	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7624716	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7625743	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7628578	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7638162	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7638808	0.89[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs7642198	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7646741	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7652191	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7653028	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs767418	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8906	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9324	0.82[GIH][hapmap];0.86[JPT][hapmap]
rs9714129	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9853056	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs9879090	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs9881468	0.86[JPT][hapmap]
rs9917834	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs998909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

mRNA abundance (count:18)

SNP	Gene	Cis/trans	Tissue	Source
rs3733039	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs3733039	RBM6	cis	parietal	SCAN
rs3733039	GNL3	cis	parietal	SCAN
rs3733039	TMEM110	cis	parietal	SCAN
rs3733039	GNL3	cis	cerebellum	SCAN
rs3733039	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs3733039	RBM6	cis	cerebellum	SCAN
rs3733039	GLYCTK	cis	parietal	SCAN
rs3733039	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs3733039	ITIH4	cis	parietal	SCAN
rs3733039	PBRM1	cis	Artery Tibial	GTEx
rs3733039	GLT8D1	cis	lymphoblastoid	seeQTL
rs3733039	NEK4	cis	cerebellum	SCAN
rs3733039	NEK4	cis	parietal	SCAN
rs3733039	PBRM1	cis	Thyroid	GTEx
rs3733039	MUSTN1	cis	Artery Aorta	GTEx
rs3733039	SPCS1	cis	parietal	SCAN
rs3733039	NT5DC2	cis	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52587200-52719200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:52592200-52719200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:52665400-52719200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:52712600-52719400	Weak transcription	Gastric	stomach
5	chr3:52713200-52719200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:52713600-52719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:52713800-52719200	Weak transcription	Aorta	Aorta
8	chr3:52714200-52719200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:52714200-52719200	Weak transcription	Esophagus	oesophagus
10	chr3:52714200-52719400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:52715200-52719400	Weak transcription	Spleen	Spleen
12	chr3:52716200-52719200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:52716800-52719200	Weak transcription	Ovary	ovary
14	chr3:52716800-52719400	Weak transcription	Small Intestine	intestine
15	chr3:52717800-52719200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:52717800-52721000	Active TSS	GM12878-XiMat	blood
17	chr3:52718000-52719400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:52718000-52719400	Flanking Active TSS	Liver	Liver
19	chr3:52718000-52719400	Weak transcription	Lung	lung
20	chr3:52718000-52720600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:52718000-52721200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:52718000-52721200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:52718200-52719200	Weak transcription	Left Ventricle	heart
24	chr3:52718200-52719400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:52718200-52719400	Weak transcription	Pancreas	Pancrea
26	chr3:52718200-52720400	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr3:52718200-52720400	Active TSS	Fetal Brain Female	brain
28	chr3:52718200-52720600	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr3:52718400-52719200	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr3:52718400-52719200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr3:52718400-52719200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:52718400-52719400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:52718400-52720400	Active TSS	K562	blood
34	chr3:52718400-52720800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:52718400-52720800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:52718400-52720800	Active TSS	Fetal Thymus	thymus
37	chr3:52718400-52720800	Active TSS	NHLF	lung
38	chr3:52718400-52721200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:52718600-52719200	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr3:52718600-52719200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr3:52718600-52719200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:52718600-52719200	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr3:52718600-52719200	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr3:52718600-52719200	Enhancers	Placenta Amnion	Placenta Amnion
45	chr3:52718600-52719200	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr3:52718600-52719200	Flanking Active TSS	NHEK	skin
47	chr3:52718600-52719400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr3:52718600-52719400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr3:52718600-52720000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr3:52718600-52720800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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