Variant report

Variant	rs4130905
Chromosome Location	chr3:52709831-52709832
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 236 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:221)

rs_ID	r²[population]
rs1014969	0.81[ASN][1000 genomes]
rs1029871	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10433615	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10510760	0.92[ASN][1000 genomes]
rs10780035	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10865973	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10865974	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10933	0.91[ASN][1000 genomes]
rs11130307	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130308	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11130310	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11130311	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130312	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130313	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130314	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130315	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130317	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130318	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11130319	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130321	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130323	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130324	0.81[ASN][1000 genomes]
rs11130325	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130326	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130327	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235	0.86[ASN][1000 genomes]
rs11708075	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11709448	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11714030	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11714088	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11714419	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11714565	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11716747	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11717043	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11717836	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11718420	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11718509	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11719514	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11720159	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11720243	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11720432	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12486554	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12486847	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12487445	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12487591	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12488461	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12488527	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12493107	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12496476	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12496634	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497998	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12498066	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12629699	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12629701	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12632265	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12632381	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12635140	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13060675	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13061253	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13061423	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13064064	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13065019	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13065851	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13068293	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13069481	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13071584	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13074853	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13076193	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13078422	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13079063	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13081031	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13081155	0.91[ASN][1000 genomes]
rs13082208	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13082960	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13083798	0.85[ASN][1000 genomes]
rs13085331	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13085775	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13085895	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13086297	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13086898	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13087772	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13095332	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13098776	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1468638	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1561337	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17264436	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1866268	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028216	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2072390	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2079929	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2083180	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2109634	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2118540	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2159644	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2164884	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2164885	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2230534	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2230535	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2239549	0.83[AMR][1000 genomes]
rs2239551	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2268024	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2268025	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2268026	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2268027	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2276824	0.84[ASN][1000 genomes]
rs2286798	0.80[AMR][1000 genomes]
rs2286800	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2289247	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289249	0.80[EUR][1000 genomes]
rs2289250	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2336145	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2336146	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2336148	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2336149	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2336542	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2336545	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2577831	0.84[ASN][1000 genomes]
rs2590838	0.83[ASN][1000 genomes]
rs2590846	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2878726	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs33967311	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34017441	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34115864	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34157897	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34168767	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34173654	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34215106	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34291015	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34341238	0.89[ASN][1000 genomes]
rs34537256	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34610142	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34610878	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34739010	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34754793	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34757451	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34918356	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34954168	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35107891	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35211965	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35212380	0.87[ASN][1000 genomes]
rs35249778	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35315313	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35409678	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35526119	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35976524	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3733039	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733041	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733045	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3755798	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3755806	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3774349	0.93[ASN][1000 genomes]
rs3774354	0.85[AMR][1000 genomes]
rs3774355	0.85[AMR][1000 genomes]
rs3774365	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3774366	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3852066	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4336110	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4435633	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4687546	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687547	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687548	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4687549	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687629	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4687630	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687633	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4687636	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687637	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687638	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687639	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687644	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687648	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687650	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62253700	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253703	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62253733	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255362	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62255364	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62255371	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62255396	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6414569	0.83[ASN][1000 genomes]
rs6445529	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6445531	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445534	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6445535	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6617	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67539070	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6762457	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6762813	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6768697	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6770463	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs678	0.83[AMR][1000 genomes]
rs6787154	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6790330	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6796726	0.91[ASN][1000 genomes]
rs6798246	0.80[EUR][1000 genomes]
rs68021750	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6803012	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6804145	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6805156	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6976	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7611731	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7612511	0.82[ASN][1000 genomes]
rs7614498	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7620039	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7622694	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7623199	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7624716	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7625743	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7628578	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7638162	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7642198	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7646741	0.81[ASN][1000 genomes]
rs7652191	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7653028	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs767418	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8906	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9714129	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9879090	0.83[ASN][1000 genomes]
rs9917834	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs998909	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv2442255	chr3:52709458-52711078	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	esv9375	chr3:52709593-52710347	Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
4	esv2311531	chr3:52709657-52710277	Strong transcription Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3497165	chr3:52709709-52710265	Strong transcription Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3497166	chr3:52709712-52710221	Strong transcription Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3461858	chr3:52709720-52710269	Strong transcription Genic enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv2083381	chr3:52709722-52710374	Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3497167	chr3:52709726-52710263	Strong transcription Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3156	chr3:52709746-52710272	Strong transcription Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3461861	chr3:52709770-52710238	Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3461859	chr3:52709772-52710236	Strong transcription Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3432493	chr3:52709779-52710222	Strong transcription Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3461860	chr3:52709787-52710191	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3415760	chr3:52709799-52710192	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4130905	PBRM1	cis	Thyroid	GTEx
rs4130905	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs4130905	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs4130905	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52587200-52719200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:52592200-52719200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:52637200-52715800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:52642600-52711200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:52650000-52712200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:52655200-52716400	Strong transcription	Fetal Thymus	thymus
7	chr3:52665400-52719200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:52670800-52715400	Strong transcription	Dnd41	blood
9	chr3:52681200-52716200	Strong transcription	Fetal Muscle Trunk	muscle
10	chr3:52688000-52714800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:52696000-52712000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:52696200-52711800	Weak transcription	Aorta	Aorta
13	chr3:52696400-52710200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr3:52697600-52710200	Weak transcription	Fetal Brain Male	brain
15	chr3:52698800-52714400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:52699400-52715600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:52700000-52710800	Weak transcription	Small Intestine	intestine
18	chr3:52700600-52715000	Strong transcription	Primary B cells from cord blood	blood
19	chr3:52701800-52715600	Strong transcription	Brain Germinal Matrix	brain
20	chr3:52702000-52714400	Strong transcription	Fetal Lung	lung
21	chr3:52703600-52712200	Strong transcription	Liver	Liver
22	chr3:52703600-52716000	Strong transcription	Fetal Brain Female	brain
23	chr3:52703800-52713400	Strong transcription	Primary T cells from cord blood	blood
24	chr3:52703800-52715800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:52704000-52712800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:52704000-52714200	Strong transcription	Thymus	Thymus
27	chr3:52704000-52714600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:52704000-52716000	Strong transcription	Fetal Muscle Leg	muscle
29	chr3:52704400-52714000	Strong transcription	Fetal Intestine Large	intestine
30	chr3:52704600-52714200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr3:52704800-52711000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:52704800-52715600	Strong transcription	Primary B cells from peripheral blood	blood
33	chr3:52705000-52710600	Weak transcription	Spleen	Spleen
34	chr3:52705000-52713000	Weak transcription	Right Atrium	heart
35	chr3:52705000-52714000	Strong transcription	Brain Anterior Caudate	brain
36	chr3:52705000-52714400	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr3:52705200-52715200	Strong transcription	Duodenum Mucosa	Duodenum
38	chr3:52705600-52714600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:52705600-52715000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:52705600-52715200	Strong transcription	Placenta	Placenta
41	chr3:52705600-52715800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr3:52705800-52715600	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:52706000-52710600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:52706000-52714200	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr3:52706000-52714400	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr3:52706000-52715000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr3:52706000-52716200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr3:52706000-52716200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr3:52706200-52710200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr3:52706200-52713000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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