Variant report

Variant	rs11130325
Chromosome Location	chr3:52770984-52770985
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 215 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:212)

rs_ID	r²[population]
rs1014969	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1029871	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10433615	0.89[EUR][1000 genomes]
rs10510760	0.83[ASN][1000 genomes]
rs10780035	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10865973	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10865974	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130307	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11130308	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11130310	0.90[EUR][1000 genomes]
rs11130311	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130312	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11130313	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11130314	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130315	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130317	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130318	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11130319	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11130321	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11130324	0.91[ASN][1000 genomes]
rs11130326	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130327	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11177	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11235	0.86[ASN][1000 genomes]
rs11708075	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11709448	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11714030	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11714088	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714419	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11714565	0.86[EUR][1000 genomes]
rs11716747	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11717043	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11717836	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11718420	0.85[EUR][1000 genomes]
rs11718509	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11719514	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11720159	0.86[EUR][1000 genomes]
rs11720243	0.85[EUR][1000 genomes]
rs11720432	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12486554	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12486847	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12487445	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12487591	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12488461	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12488527	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12493107	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12496476	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12496634	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12497998	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12498066	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12629699	0.82[EUR][1000 genomes]
rs12629701	0.85[EUR][1000 genomes]
rs12632265	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12632381	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12635140	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13060675	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13061253	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13061423	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13064064	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13065019	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13065851	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13068293	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13069481	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13071584	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13074853	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13076193	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13078422	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13079063	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13081031	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13081155	0.81[ASN][1000 genomes]
rs13082208	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13082960	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13085331	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13085775	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13085895	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13086297	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13086898	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13087772	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13095332	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1468638	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1561337	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17264436	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1866268	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2019065	0.84[EUR][1000 genomes]
rs2028216	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2072390	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2079929	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2083180	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2109634	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2118540	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2159644	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2164884	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2164885	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2230534	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2230535	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2239549	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2239550	0.81[EUR][1000 genomes]
rs2239551	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2268024	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2268025	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2268026	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2268027	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2286800	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2289247	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2289250	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2300149	0.82[EUR][1000 genomes]
rs2336145	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2336146	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2336148	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2336149	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2336542	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2336545	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590846	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2878726	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs33967311	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34017441	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34115864	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34157897	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34168767	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34173654	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34215106	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34291015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34537256	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34610142	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34610878	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34739010	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34754793	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34757451	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34918356	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34954168	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35107891	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35211965	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35212380	0.85[ASN][1000 genomes]
rs35249778	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35315313	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35409678	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35526119	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35976524	0.85[ASN][1000 genomes]
rs3733039	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3733041	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3733045	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3755798	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3755806	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3774354	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3774355	0.82[AMR][1000 genomes]
rs3774365	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3774366	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3852066	0.88[EUR][1000 genomes]
rs4130905	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4336110	0.86[EUR][1000 genomes]
rs4435633	0.87[EUR][1000 genomes]
rs4687546	0.85[EUR][1000 genomes]
rs4687547	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4687548	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4687549	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687629	0.86[EUR][1000 genomes]
rs4687630	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4687633	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4687636	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4687637	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4687638	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4687639	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4687644	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4687648	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687650	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62253700	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62253703	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62253733	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62255362	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62255364	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62255371	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255396	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6414570	0.81[EUR][1000 genomes]
rs6445529	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6445531	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6445534	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6445535	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6617	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67539070	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6762457	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6762813	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6768697	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6770463	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs678	0.80[AMR][1000 genomes]
rs6787154	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6790330	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6792369	0.80[AMR][1000 genomes]
rs6796726	0.82[ASN][1000 genomes]
rs68021750	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6803012	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6804145	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6805156	0.85[EUR][1000 genomes]
rs6976	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7611731	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7614498	0.86[EUR][1000 genomes]
rs7620039	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7622694	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7623199	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7624716	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7625743	0.86[EUR][1000 genomes]
rs7628578	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7638162	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7642198	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7646741	0.91[ASN][1000 genomes]
rs7652191	0.86[EUR][1000 genomes]
rs7653028	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs767418	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8906	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9714129	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9917834	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs998909	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv508219	chr3:52741193-52803899	Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv834698	chr3:52749983-52928219	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11130325	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs11130325	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs11130325	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs11130325	PBRM1	cis	Artery Tibial	GTEx
rs11130325	PBRM1	cis	Thyroid	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52741600-52804000	Weak transcription	Psoas Muscle	Psoas
2	chr3:52742400-52771400	Weak transcription	K562	blood
3	chr3:52742400-52772800	Weak transcription	Pancreas	Pancrea
4	chr3:52749000-52771600	Weak transcription	Colonic Mucosa	Colon
5	chr3:52749200-52779800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:52749400-52776200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:52756200-52777400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:52761600-52781000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:52761600-52802400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:52762000-52787000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:52762400-52772200	Weak transcription	Thymus	Thymus
12	chr3:52762600-52776000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr3:52763800-52788400	Strong transcription	Fetal Brain Female	brain
14	chr3:52763800-52802600	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:52764000-52800200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:52764000-52802800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:52764200-52772000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:52764200-52774200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:52764400-52776000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:52764400-52802600	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:52764800-52781600	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr3:52764800-52789400	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr3:52765200-52789400	Strong transcription	Adipose Nuclei	Adipose
24	chr3:52765200-52793400	Strong transcription	Fetal Intestine Large	intestine
25	chr3:52765400-52800400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:52765600-52771600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:52765600-52788800	Strong transcription	Brain Anterior Caudate	brain
28	chr3:52765600-52789000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr3:52765600-52789400	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr3:52766200-52789600	Strong transcription	Placenta	Placenta
31	chr3:52766400-52789400	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr3:52766400-52802600	Strong transcription	Fetal Thymus	thymus
33	chr3:52766600-52771800	Strong transcription	HepG2	liver
34	chr3:52767000-52785400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr3:52767200-52788000	Strong transcription	Brain Germinal Matrix	brain
36	chr3:52767600-52775800	Weak transcription	Spleen	Spleen
37	chr3:52767600-52776200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr3:52767600-52802600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:52767600-52803400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr3:52767800-52771000	Weak transcription	Lung	lung
41	chr3:52767800-52771400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr3:52767800-52771600	Strong transcription	A549	lung
43	chr3:52767800-52774400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr3:52767800-52777000	Strong transcription	Liver	Liver
45	chr3:52767800-52777200	Weak transcription	Esophagus	oesophagus
46	chr3:52767800-52777600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr3:52767800-52779800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr3:52767800-52780200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr3:52767800-52786000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:52767800-52793000	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links