Variant report

Variant	rs62255371
Chromosome Location	chr3:52747321-52747322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52743756..52745497-chr3:52746997..52749593,2	MCF-7	breast:

Extended variants
information (count: 224 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:222)

rs_ID	r²[population]
rs1014969	0.88[ASN][1000 genomes]
rs1029871	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10433615	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10510760	0.90[ASN][1000 genomes]
rs10780035	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10865973	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10865974	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10933	0.85[ASN][1000 genomes]
rs11130307	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130308	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130310	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130311	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130312	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130313	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130314	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130315	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130317	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130318	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11130319	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130321	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130323	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130324	0.86[ASN][1000 genomes]
rs11130325	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130326	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130327	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11177	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11235	0.91[ASN][1000 genomes]
rs11708075	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11709448	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11714030	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714088	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714419	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11714565	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11716747	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11717043	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11717836	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11718420	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11718509	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11719514	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11720159	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11720243	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11720432	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12486554	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12486847	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12487445	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12487591	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12488461	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12488527	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12493107	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12496476	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12496634	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12497998	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12498066	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12629699	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12629701	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12632265	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12632381	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12635140	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13060675	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13061253	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13061423	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13064064	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13065019	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13065851	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13068293	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13069481	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13071584	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13074853	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13076193	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13078422	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13079063	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13081031	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13081155	0.86[ASN][1000 genomes]
rs13082208	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13082960	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13083798	0.85[ASN][1000 genomes]
rs13085331	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13085775	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13085895	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13086297	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13086898	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13087772	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13095332	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13098776	0.85[ASN][1000 genomes]
rs1468638	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561337	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17264436	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1866268	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2028216	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2072390	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2079929	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2083180	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2109634	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2118540	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2159644	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2164884	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2164885	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2230534	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2230535	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2251219	0.80[EUR][1000 genomes]
rs2268024	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2268025	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2268026	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2268027	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2276824	0.84[ASN][1000 genomes]
rs2286800	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2289247	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2289249	0.81[EUR][1000 genomes]
rs2289250	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2336145	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2336146	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2336148	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2336149	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2336542	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2336545	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2577831	0.84[ASN][1000 genomes]
rs2590838	0.83[ASN][1000 genomes]
rs2590846	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2878726	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs33964154	0.82[EUR][1000 genomes]
rs33967311	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34017441	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34115864	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34157897	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34168767	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34173654	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34215106	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34291015	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34341238	0.87[ASN][1000 genomes]
rs34537256	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34610142	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34610878	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34739010	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34754793	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34757451	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34918356	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34954168	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35107891	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35211965	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35212380	0.93[ASN][1000 genomes]
rs35249778	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35315313	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35409678	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35526119	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35976524	0.93[ASN][1000 genomes]
rs3733039	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3733041	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3733045	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3755798	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3755806	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3774349	0.87[ASN][1000 genomes]
rs3774354	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs3774355	0.80[AMR][1000 genomes]
rs3774365	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3774366	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3852066	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4130905	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4336110	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4435633	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687546	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687547	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687548	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687549	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4687629	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687630	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687633	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687636	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4687637	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687638	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687639	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687644	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687648	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4687650	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62253700	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62253703	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253733	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255362	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62255364	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62255396	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6414569	0.82[ASN][1000 genomes]
rs6445529	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6445531	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6445534	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6445535	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6617	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67539070	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6762457	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6762813	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6768697	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6770463	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6787154	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6788887	0.81[EUR][1000 genomes]
rs6788993	0.81[EUR][1000 genomes]
rs6790330	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6796726	0.90[ASN][1000 genomes]
rs6798246	0.81[EUR][1000 genomes]
rs68021750	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6803012	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6804145	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6805156	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6976	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7611731	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7612511	0.82[ASN][1000 genomes]
rs7614498	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7620039	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7622694	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7623199	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7624716	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625743	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7628578	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7638162	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7642198	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7646741	0.86[ASN][1000 genomes]
rs7652191	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7653028	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs767418	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8906	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9714129	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9758945	0.80[EUR][1000 genomes]
rs9879090	0.83[ASN][1000 genomes]
rs9917834	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs998909	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv508219	chr3:52741193-52803899	Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs62255371	PBRM1	cis	Thyroid	GTEx
rs62255371	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs62255371	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs62255371	PBRM1	cis	Artery Tibial	GTEx
rs62255371	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52741000-52748200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:52741000-52748200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:52741000-52748800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:52741000-52748800	Weak transcription	Lung	lung
5	chr3:52741200-52748200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:52741400-52765600	Weak transcription	Aorta	Aorta
7	chr3:52741400-52766600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:52741600-52748000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:52741600-52748200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:52741600-52748200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:52741600-52748400	Weak transcription	Colonic Mucosa	Colon
12	chr3:52741600-52748400	Weak transcription	Right Ventricle	heart
13	chr3:52741600-52748600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:52741600-52748600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:52741600-52752600	Weak transcription	Ovary	ovary
16	chr3:52741600-52752600	Weak transcription	A549	lung
17	chr3:52741600-52764000	Weak transcription	Small Intestine	intestine
18	chr3:52741600-52765600	Weak transcription	Esophagus	oesophagus
19	chr3:52741600-52804000	Weak transcription	Psoas Muscle	Psoas
20	chr3:52741800-52747400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:52741800-52748400	Weak transcription	Fetal Heart	heart
22	chr3:52742000-52748600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:52742000-52754200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:52742000-52765600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:52742000-52766400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:52742000-52766400	Weak transcription	NHLF	lung
27	chr3:52742000-52766600	Weak transcription	Hela-S3	cervix
28	chr3:52742000-52766600	Weak transcription	NHEK	skin
29	chr3:52742200-52748600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:52742200-52748800	Weak transcription	Stomach Mucosa	stomach
31	chr3:52742200-52767200	Weak transcription	Fetal Brain Male	brain
32	chr3:52742200-52768800	Weak transcription	Colon Smooth Muscle	Colon
33	chr3:52742400-52748000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr3:52742400-52752600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr3:52742400-52754000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr3:52742400-52754000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr3:52742400-52754400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr3:52742400-52764200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:52742400-52771400	Weak transcription	K562	blood
40	chr3:52742400-52772800	Weak transcription	Pancreas	Pancrea
41	chr3:52742600-52766000	Weak transcription	HUVEC	blood vessel
42	chr3:52742800-52748000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr3:52742800-52752600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr3:52743000-52752400	Weak transcription	HSMM	muscle
45	chr3:52743000-52752600	Weak transcription	HSMMtube	muscle
46	chr3:52743000-52754000	Weak transcription	Primary T cells from cord blood	blood
47	chr3:52743000-52766600	Weak transcription	NH-A	brain
48	chr3:52743000-52766600	Weak transcription	NHDF-Ad	bronchial
49	chr3:52743200-52747400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:52743200-52748400	Weak transcription	Duodenum Mucosa	Duodenum

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