Variant report

Variant	rs11714030
Chromosome Location	chr3:52765882-52765883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:52765854-52765935	Lung_OC	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52738889..52741112-chr3:52764320..52766937,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270941	TF binding region
ENSG00000114902	Chromatin interaction
ENSG00000016864	Chromatin interaction

Extended variants
information (count: 225 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:222)

rs_ID	r²[population]
rs1014969	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1029871	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10433615	0.89[EUR][1000 genomes]
rs10510760	0.85[ASN][1000 genomes]
rs10780035	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10865973	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10865974	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10933	0.80[ASN][1000 genomes]
rs11130307	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11130308	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130310	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11130311	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130312	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130313	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130314	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130315	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130317	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130318	0.84[EUR][1000 genomes]
rs11130319	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130321	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11130323	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11130324	0.91[ASN][1000 genomes]
rs11130325	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130326	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130327	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11177	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11235	0.86[ASN][1000 genomes]
rs11708075	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11709448	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11714088	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714419	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11714565	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11716747	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11717043	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11717836	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11718420	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11718509	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11719514	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11720159	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11720243	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11720432	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12486554	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12486847	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12487445	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12487591	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12488461	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12488527	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12493107	0.87[EUR][1000 genomes]
rs12496476	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12496634	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12497998	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12498066	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12629699	0.88[EUR][1000 genomes]
rs12629701	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12632265	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12632381	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12635140	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13059862	0.82[EUR][1000 genomes]
rs13060048	0.81[EUR][1000 genomes]
rs13060675	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13061253	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13061423	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13063160	0.82[EUR][1000 genomes]
rs13064064	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13065019	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13065851	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13068293	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13069481	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13071584	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13074853	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13076193	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13078422	0.83[EUR][1000 genomes]
rs13079063	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13081031	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13081155	0.81[ASN][1000 genomes]
rs13082208	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13082960	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13085331	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13085775	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13085895	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13086297	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13086898	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13087772	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13094778	0.84[AMR][1000 genomes]
rs13095332	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13098776	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1468638	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1561337	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1570	0.80[EUR][1000 genomes]
rs17052256	0.81[EUR][1000 genomes]
rs17052259	0.81[EUR][1000 genomes]
rs17264436	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1821879	0.81[EUR][1000 genomes]
rs1866268	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2028216	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2072390	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2079929	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083180	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2109634	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2118540	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2159644	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2164884	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2164885	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2230534	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2230535	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2268024	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2268025	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2268026	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2268027	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2286800	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2289247	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2289250	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2336145	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2336146	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2336148	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2336149	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2336542	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2336545	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590846	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2878628	0.80[EUR][1000 genomes]
rs2878726	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs33967311	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34017441	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34115864	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34157897	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34168767	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34173654	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34215106	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34291015	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34341238	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34537256	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34610142	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34610878	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34739010	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34754793	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34757451	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34918356	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34954168	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35107891	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35211965	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35212380	0.87[ASN][1000 genomes]
rs35249778	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35315313	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35409678	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35526119	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35976524	0.88[ASN][1000 genomes]
rs3733039	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3733041	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3733045	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3755798	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3755806	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3774349	0.82[ASN][1000 genomes]
rs3774365	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3774366	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3796353	0.81[EUR][1000 genomes]
rs3852066	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4130905	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4336110	0.86[EUR][1000 genomes]
rs4435633	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4687546	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4687547	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4687548	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687549	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687629	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4687630	0.84[EUR][1000 genomes]
rs4687633	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687636	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687637	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687638	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687639	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687644	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4687648	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687650	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62253700	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62253703	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62253733	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62255362	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255364	0.86[EUR][1000 genomes]
rs62255371	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62255396	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6414569	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6414570	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6445529	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6445531	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6445534	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6445535	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6617	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67539070	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6762457	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6762813	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6768697	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6770463	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6786919	0.82[EUR][1000 genomes]
rs6787154	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6788887	0.81[EUR][1000 genomes]
rs6788993	0.81[EUR][1000 genomes]
rs6790330	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6796726	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68021750	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6803012	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6804145	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6805156	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6976	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7611731	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7614498	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7620039	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7622694	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7623199	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7624716	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7625743	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7628578	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7638162	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7642198	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7646741	0.91[ASN][1000 genomes]
rs7652191	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7653028	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs767418	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8906	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9714129	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9758945	0.81[EUR][1000 genomes]
rs9917834	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs998909	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv508219	chr3:52741193-52803899	Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv834698	chr3:52749983-52928219	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11714030	PBRM1	cis	Thyroid	GTEx
rs11714030	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs11714030	PBRM1	cis	Artery Tibial	GTEx
rs11714030	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs11714030	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52741400-52766600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:52741600-52804000	Weak transcription	Psoas Muscle	Psoas
3	chr3:52742000-52766400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:52742000-52766400	Weak transcription	NHLF	lung
5	chr3:52742000-52766600	Weak transcription	Hela-S3	cervix
6	chr3:52742000-52766600	Weak transcription	NHEK	skin
7	chr3:52742200-52767200	Weak transcription	Fetal Brain Male	brain
8	chr3:52742200-52768800	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:52742400-52771400	Weak transcription	K562	blood
10	chr3:52742400-52772800	Weak transcription	Pancreas	Pancrea
11	chr3:52742600-52766000	Weak transcription	HUVEC	blood vessel
12	chr3:52743000-52766600	Weak transcription	NH-A	brain
13	chr3:52743000-52766600	Weak transcription	NHDF-Ad	bronchial
14	chr3:52743200-52766600	Weak transcription	Osteobl	bone
15	chr3:52744800-52767000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:52747000-52766600	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:52749000-52771600	Weak transcription	Colonic Mucosa	Colon
18	chr3:52749200-52766800	Weak transcription	Right Ventricle	heart
19	chr3:52749200-52767000	Weak transcription	Fetal Heart	heart
20	chr3:52749200-52767400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr3:52749200-52779800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:52749400-52766600	Weak transcription	Gastric	stomach
23	chr3:52749400-52776200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:52754200-52766200	Weak transcription	Brain Germinal Matrix	brain
25	chr3:52755800-52767200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:52756200-52767400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr3:52756200-52777400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:52756600-52767200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr3:52759600-52768000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:52761200-52770200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:52761400-52766600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:52761600-52781000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:52761600-52802400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr3:52762000-52770000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr3:52762000-52787000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr3:52762200-52767200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:52762200-52767600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:52762400-52772200	Weak transcription	Thymus	Thymus
39	chr3:52762600-52776000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr3:52763000-52766600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:52763200-52766400	Weak transcription	Fetal Lung	lung
42	chr3:52763400-52766600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr3:52763400-52768600	Strong transcription	Fetal Muscle Leg	muscle
44	chr3:52763400-52770200	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr3:52763600-52767000	Strong transcription	Fetal Stomach	stomach
46	chr3:52763600-52769400	Strong transcription	Fetal Muscle Trunk	muscle
47	chr3:52763800-52766600	Strong transcription	Liver	Liver
48	chr3:52763800-52766800	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr3:52763800-52768400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr3:52763800-52769000	Strong transcription	Left Ventricle	heart

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